Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0102
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6... 44 1e-04
AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threon... 44 1e-04
M32877-1|AAA28001.1| 669|Caenorhabditis elegans daf-1 protein. 33 0.19
AF067616-10|AAC19189.2| 668|Caenorhabditis elegans Abnormal dau... 33 0.19
AF067616-9|AAP82657.1| 669|Caenorhabditis elegans Abnormal daue... 33 0.19
AF022972-13|AAC48241.2| 527|Caenorhabditis elegans Udp-glucuron... 30 1.7
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 5.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 5.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 5.3
AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical ... 28 5.3
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 7.0
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 28 7.0
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 28 7.0
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 28 7.0
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 28 7.0
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 7.0
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 27 9.2
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6
protein.
Length = 636
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +3
Query: 510 SGSGSGLPLLVQRTVAKQIQMVESIGKGRYGE 605
SGSGSG L+QRTV + + ++++IG+GRYGE
Sbjct: 247 SGSGSGQAALIQRTVRQDLTIIKTIGQGRYGE 278
Score = 31.9 bits (69), Expect = 0.43
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +2
Query: 47 CYVSREIRAL*LSNGTCVTQVGGYCFVAVEEVLDESGS-VVLDRTAGCLSADE-SGL--M 214
CY + + +++ +N TCV Q G C+ AVEEV +++ + GC + + SG +
Sbjct: 68 CYCNYD-QSICGNNMTCVKQDGAACYHAVEEVYNKAEKRMETLHKWGCATLERGSGASHL 126
Query: 215 QCKSSQVPHQHPK 253
C S + H PK
Sbjct: 127 TCNSWRAAHHSPK 139
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 232 SATSAPERIECCYDDDLCNLRLHP 303
+A +P+ I CCY+ + CN L P
Sbjct: 133 AAHHSPKSIGCCYEGNYCNKNLIP 156
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 614 ARWRGEKVAVKVFFTTEEAS 673
A +RG VAVK F+TT+E S
Sbjct: 282 ALYRGSYVAVKTFYTTDEDS 301
>AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threonine
kinase SMA-6 protein.
Length = 636
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +3
Query: 510 SGSGSGLPLLVQRTVAKQIQMVESIGKGRYGE 605
SGSGSG L+QRTV + + ++++IG+GRYGE
Sbjct: 247 SGSGSGQAALIQRTVRQDLTIIKTIGQGRYGE 278
Score = 31.9 bits (69), Expect = 0.43
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +2
Query: 47 CYVSREIRAL*LSNGTCVTQVGGYCFVAVEEVLDESGS-VVLDRTAGCLSADE-SGL--M 214
CY + + +++ +N TCV Q G C+ AVEEV +++ + GC + + SG +
Sbjct: 68 CYCNYD-QSICGNNMTCVKQDGAACYHAVEEVYNKAEKRMETLHKWGCATLERGSGASHL 126
Query: 215 QCKSSQVPHQHPK 253
C S + H PK
Sbjct: 127 TCNSWRAAHHSPK 139
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 232 SATSAPERIECCYDDDLCNLRLHP 303
+A +P+ I CCY+ + CN L P
Sbjct: 133 AAHHSPKSIGCCYEGNYCNKNLIP 156
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 614 ARWRGEKVAVKVFFTTEEAS 673
A +RG VAVK F+TT+E S
Sbjct: 282 ALYRGSYVAVKTFYTTDEDS 301
>M32877-1|AAA28001.1| 669|Caenorhabditis elegans daf-1 protein.
Length = 669
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 492 DMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGECGSQD 620
D+ SGSG G L + T+ QI++ +G GR+G D
Sbjct: 269 DVLEETSGSGMGPTTLHKLTIGGQIRLTGRVGSGRFGNVSRGD 311
>AF067616-10|AAC19189.2| 668|Caenorhabditis elegans Abnormal dauer
formation protein1, isoform b protein.
Length = 668
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 492 DMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGECGSQD 620
D+ SGSG G L + T+ QI++ +G GR+G D
Sbjct: 269 DVLEETSGSGMGPTTLHKLTIGGQIRLTGRVGSGRFGNVSRGD 311
>AF067616-9|AAP82657.1| 669|Caenorhabditis elegans Abnormal dauer
formation protein1, isoform a protein.
Length = 669
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 492 DMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGECGSQD 620
D+ SGSG G L + T+ QI++ +G GR+G D
Sbjct: 269 DVLEETSGSGMGPTTLHKLTIGGQIRLTGRVGSGRFGNVSRGD 311
>AF022972-13|AAC48241.2| 527|Caenorhabditis elegans
Udp-glucuronosyltransferase protein41 protein.
Length = 527
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 447 TEARLQEAAVSTSAADMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGECGSQDGA 626
TEA +S + FRNIS + S ++V T +Q Q+ E++ + +Q+G
Sbjct: 44 TEAGHNVTVLSIIISSKFRNISYTKSTKDIVVVETTTEQDQLTENMENDDFARYWTQEGT 103
Query: 627 V 629
+
Sbjct: 104 M 104
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 DRTAGCLSADESGLMQCKSSQVPHQ-HPKE 256
DR+A C+ DES + C+S + H +P E
Sbjct: 1036 DRSARCIDTDESYICACQSGFIDHSPNPSE 1065
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 DRTAGCLSADESGLMQCKSSQVPHQ-HPKE 256
DR+A C+ DES + C+S + H +P E
Sbjct: 1620 DRSARCIDTDESYICACQSGFIDHSPNPSE 1649
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 DRTAGCLSADESGLMQCKSSQVPHQ-HPKE 256
DR+A C+ DES + C+S + H +P E
Sbjct: 1036 DRSARCIDTDESYICACQSGFIDHSPNPSE 1065
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 DRTAGCLSADESGLMQCKSSQVPHQ-HPKE 256
DR+A C+ DES + C+S + H +P E
Sbjct: 1620 DRSARCIDTDESYICACQSGFIDHSPNPSE 1649
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 DRTAGCLSADESGLMQCKSSQVPHQ-HPKE 256
DR+A C+ DES + C+S + H +P E
Sbjct: 1620 DRSARCIDTDESYICACQSGFIDHSPNPSE 1649
>AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical
protein Y59H11AR.4 protein.
Length = 457
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 640 GYFLTAPSCEPHSP*RPFPMDSTICICLATVLWTSSGKP 524
GYFL A C PHS F + LAT+++ G P
Sbjct: 174 GYFLDAKGCYPHSSYPDF-TPTAASNSLATIIFAYGGHP 211
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 298 HPQLSEPSPDVTESPGVRPPITSSP 372
HP L+ P + +SP + PP T SP
Sbjct: 1204 HPGLTTPMASIFQSPTMPPPHTPSP 1228
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 298 HPQLSEPSPDVTESPGVRPPITSSP 372
HP L+ P + +SP + PP T SP
Sbjct: 1204 HPGLTTPMASIFQSPTMPPPHTPSP 1228
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 316 PSPDVTESPGVRPPITSSPT 375
P PDVTE PP+ SSPT
Sbjct: 768 PLPDVTEPKLYLPPVPSSPT 787
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 316 PSPDVTESPGVRPPITSSPT 375
P PDVTE PP+ SSPT
Sbjct: 768 PLPDVTEPKLYLPPVPSSPT 787
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 316 PSPDVTESPGVRPPITSSPT 375
P PDVTE PP+ SSPT
Sbjct: 767 PLPDVTEPKLYLPPVPSSPT 786
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 316 PSPDVTESPGVRPPITSSPT 375
P PDVTE PP+ SSPT
Sbjct: 696 PLPDVTEPKLYLPPVPSSPT 715
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 298 HPQLSEPSPDVTESPGVRPPITSSP 372
HP L+ P + +SP + PP T SP
Sbjct: 1204 HPGLTTPMASIFQSPTMPPPHTPSP 1228
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 86 NGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKESSA 265
N C + G + + + E G V++ + G +A + ++ V P +SA
Sbjct: 402 NAGC-SNSNGQLYPLISVIAKELGGVIIPKKGGVTTAPTT-----VATTVTTGRPPMTSA 455
Query: 266 VTTTTCAT 289
VTTTT AT
Sbjct: 456 VTTTTAAT 463
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 223 FALHQARLVSGETPGGPVQHHAAALVEHLLDGDEAVAPDLRDA 95
F+ + +L+ G T + ++ + +V +L DG+E + RDA
Sbjct: 289 FSEEEKKLIKGSTDFLGINYYLSHIVRNLNDGEEPASQSERDA 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,241
Number of Sequences: 27780
Number of extensions: 276916
Number of successful extensions: 1003
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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