Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0102
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    30   1.6  
At2g37720.1 68415.m04625 expressed protein                             29   2.8  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    29   3.8  
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy...    28   5.0  
At1g72330.1 68414.m08367 alanine aminotransferase, putative simi...    28   6.6  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    27   8.7  
At3g25855.1 68416.m03221 expressed protein                             27   8.7  
At2g17525.1 68415.m02027 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2...    27   8.7  
At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2...    27   8.7  
At1g67840.2 68414.m07743 ATP-binding region, ATPase-like domain-...    27   8.7  
At1g67840.1 68414.m07744 ATP-binding region, ATPase-like domain-...    27   8.7  

>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 143 LDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKE 256
           LD++ S  LD    CLS DESG +   S +    H K+
Sbjct: 459 LDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAHLKD 496


>At2g37720.1 68415.m04625 expressed protein 
          Length = 482

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 80  LSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKES 259
           LS G+ +T  GG     VE  ++ +   +LD TA     DE+ +  CK    P +    +
Sbjct: 397 LSRGSKITGEGGSLDTIVESAVNGTRVKILDITALSKLRDEAHIAGCKLK--PKKASNVT 454

Query: 260 SAVTTTTC 283
           SA T   C
Sbjct: 455 SAPTFNDC 462


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1423

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 360  HEQSHLIGRHRSLRGSHRF-----PGSFFVVIQTTEARLQEAAVSTSAADMFRN 506
            HE +HLI    S++G ++      P ++ + + TT    QEAA+    A +++N
Sbjct: 1064 HESTHLINYFESIQGINKITEGYNPATWMLEVSTTS---QEAALGVDFAQVYKN 1114


>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
           symporter (SUC2) nearly identical to sucrose-proton
           symporter SUC2 [Arabidopsis thaliana] GI:407092
          Length = 512

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 471 AVSTSAADMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGE 605
           ++  + A +F   SG+G GL L V        QMV S+G G + E
Sbjct: 423 SIPFALASIFSTNSGAGQGLSLGVLNLAIVVPQMVISVGGGPFDE 467


>At1g72330.1 68414.m08367 alanine aminotransferase, putative similar
           to alanine aminotransferase 2 SP|P34106 from Panicum
           miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884
           from Oryza sativa
          Length = 540

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 558 KQIQMV--ESIGKGRYGECGSQDG 623
           K I +V  +S+ KG YGECG + G
Sbjct: 345 KDISLVSFQSVSKGYYGECGKRGG 368


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 283 CNLRLHPQLSEPSPDVTESPGVRPPITS-SPT 375
           C     P +  PSP  T SPG  PP  S SP+
Sbjct: 400 CGRSTRPPVVVPSPPTTPSPGGSPPSPSISPS 431


>At3g25855.1 68416.m03221 expressed protein
          Length = 112

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 522 SGLPLLVQRTVAKQIQM--VESIGKGRYGECGSQDGAVRK*PSKYSSRP 662
           S + L +QR + +++++  VE +  G  GE GS+     + P +YS++P
Sbjct: 55  SDVALKLQRKMKRRVEILEVEDLTNGHGGEEGSEHELPYEQPHEYSNQP 103


>At2g17525.1 68415.m02027 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat; gene
           structure supported by cDNA sequence and Brassica genome
           sequence alignments.
          Length = 626

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 95  TCRWTVTTHGFLGIRNSWRALIH 27
           T RW  T  GF+  R+++RAL H
Sbjct: 62  TFRWASTFPGFIHSRSTYRALFH 84


>At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 552 VAKQIQMVE--SIGKGRYGECGSQDG 623
           ++K++Q++   ++ KG +GECG + G
Sbjct: 277 ISKEVQLISFHTVSKGYWGECGQRGG 302


>At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 552 VAKQIQMVE--SIGKGRYGECGSQDG 623
           ++K++Q++   ++ KG +GECG + G
Sbjct: 277 ISKEVQLISFHTVSKGYWGECGQRGG 302


>At1g67840.2 68414.m07743 ATP-binding region, ATPase-like
           domain-containing protein contains Pfam profile PF02518:
           ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
           domain protein; similar to ESTs gb|AI995396.1,
           dbj|AV557393.1, and dbj|AV557055.1
          Length = 445

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
 Frame = +3

Query: 255 NRVLLRRRPVQPSAPSSAI*TVTGRDGVPGG-----AAPDHEQSHLIGRHRSL---RGSH 410
           +R+ LRR    PS  +  +  + G  G+P G     A+   +Q  L+ +HR+       H
Sbjct: 151 DRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQVELVSKHRAAVFPMVKH 210

Query: 411 RFPGSFFVVIQTTEARLQE 467
            F   F V     EA  +E
Sbjct: 211 PFVVGFLVAELPVEAEEEE 229


>At1g67840.1 68414.m07744 ATP-binding region, ATPase-like
           domain-containing protein contains Pfam profile PF02518:
           ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
           domain protein; similar to ESTs gb|AI995396.1,
           dbj|AV557393.1, and dbj|AV557055.1
          Length = 611

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
 Frame = +3

Query: 255 NRVLLRRRPVQPSAPSSAI*TVTGRDGVPGG-----AAPDHEQSHLIGRHRSL---RGSH 410
           +R+ LRR    PS  +  +  + G  G+P G     A+   +Q  L+ +HR+       H
Sbjct: 151 DRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQVELVSKHRAAVFPMVKH 210

Query: 411 RFPGSFFVVIQTTEARLQE 467
            F   F V     EA  +E
Sbjct: 211 PFVVGFLVAELPVEAEEEE 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,977
Number of Sequences: 28952
Number of extensions: 257639
Number of successful extensions: 972
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)