Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0101
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    50   3e-07
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    48   1e-06
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    47   3e-06
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    46   7e-06
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    40   3e-04
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    33   0.043
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    29   0.92 
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    28   1.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    28   1.6  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   8.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.6  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   8.6  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   8.6  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 22/51 (43%), Positives = 31/51 (60%)
 Frame = +3

Query: 537 PLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIV 689
           P+GV G I  +NFP  +  W  A A+ CG+  + K +E TPL A+ +TK V
Sbjct: 160 PIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSALCLTKFV 210



 Score = 28.7 bits (61), Expect = 0.92
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 316 RGEVVRQIGDALRENLQPLGKLVSLEMGKILPEAIGEV 429
           RG  + ++ D + +NL+ L  + +L+ GK +  A G+V
Sbjct: 87  RGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV 124


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +3

Query: 537 PLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVE 692
           P+GVVGIIT +NFP A+       A+  G   V +P+  TP  A+A+ K+ E
Sbjct: 159 PVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALAKLAE 210


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +3

Query: 528 KWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVESVLQK 707
           K  P+GV G I  +N+P+ + GW  A A+  G+  + K +ETTPL  +    +VE     
Sbjct: 151 KRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLYFATLVEEAGFP 210

Query: 708 NNIPGAIASL 737
             +   I+ L
Sbjct: 211 KGVVNIISGL 220


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +3

Query: 510 GHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTP 659
           G    EK  P GV+G+IT +NFP+ +  W    A+  G+  V KPSE  P
Sbjct: 153 GFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSELAP 202


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +3

Query: 507 SGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKI 686
           S + LI    P+GV  +IT +NFP A+       A+  G   ++ P+  TP V + + ++
Sbjct: 144 SQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRL 203

Query: 687 VESVLQKNNIPGAIAS 734
            +     + +   I S
Sbjct: 204 AQEAGFPDGVLNVITS 219


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 528 KWNPLGVVGIITAFNFPVAVFGWNSAIAMVCGDATVWKPSETTPLVAVAVTKIVESVLQ 704
           K+ PLGV+  + ++N+P+         A+  G+A V K SE T        ++V S+LQ
Sbjct: 124 KYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWSTHQYCEMVRSLLQ 182


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 234  AGSAPIMGVRQCGTGSVACVG 296
            +G+ P++GV    TG VAC G
Sbjct: 1354 SGADPVLGVEMASTGEVACFG 1374


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 234  AGSAPIMGVRQCGTGSVACVG 296
            AG+ P +GV    TG VAC G
Sbjct: 977  AGADPYLGVEMSSTGEVACFG 997


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 621 GDATVWKPSETTPLV 665
           G  T+W PS TTPLV
Sbjct: 245 GQVTLWSPSSTTPLV 259


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -1

Query: 691 STILVTATATSGVVSDGFQTVASPQTIAIALFHPKTATGKLKAVMMPTTPSGFHFSIRTC 512
           +T +  + + S VV+   + +  P  I  A    + AT    A + P  P G      T 
Sbjct: 266 TTYVGPSPSASSVVAYTTKCIVVP-VITTAASQSEAATPSPSAAVYPLFPHGIRLIDSTK 324

Query: 511 PDALTGTQYRGV 476
           P+A +G  Y  V
Sbjct: 325 PEANSGNVYSPV 336


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 355 ENLQPLGKLVSLEMGKILPEAIGEVIEYIHVCDLALGLSRTLPGTVFP 498
           ++L P GKL+SL+    L + +G + E +   DL++    TLP + FP
Sbjct: 174 DDLNP-GKLISLQNLYNLLKKLGGIAEPLPQLDLSISSLYTLP-SFFP 219


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 498 VRASGHVLIEKWNPLGVVGIITAFNFPVAVFGWNSAIAMVCG 623
           VR + H L       G +     FNF  +V G+ + + + CG
Sbjct: 469 VRGTAHGLSAALGKCGAILASLLFNFLTSVIGYGNVMWIFCG 510


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -1

Query: 601 LFHPKTATGKLKAVMM-PTTPSGFHFSIRTCPDALTGTQYRGVCGTDPKLSHTREYTRS 428
           +FH K    K   +   P  P   H SIRT P A+T T       +  +     E+T S
Sbjct: 114 VFHTKETNSKSSTLHSNPYCPE--HHSIRTLPSAVTATTSNISTSSSHRSDLPNEWTNS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,645
Number of Sequences: 5004
Number of extensions: 69073
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)