Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0101
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 301 VPPTHATLPVPHWR 260
           VPP ++ L  PHWR
Sbjct: 34  VPPEYSDLVRPHWR 47


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 301 VPPTHATLPVPHWR 260
           VPP ++ L  PHWR
Sbjct: 34  VPPEYSDLVHPHWR 47


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 26  SCVIASLY*STNGSQRINSFPHRGPEVLVFEGFRFKRKQC 145
           SCVIAS + +   ++  N  P R   +   +  R +R +C
Sbjct: 222 SCVIASRHRNLEATESENVRPRRNVLIERAKSIRARRTEC 261


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 546 HQAGSIFRSGRVRTL*REHSTGECAGQ 466
           H A  I+R+G V  L R H    C G+
Sbjct: 163 HFALRIYRNGTVNYLMRRHLILSCQGR 189


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 546 HQAGSIFRSGRVRTL*REHSTGECAGQ 466
           H A  I+R+G V  L R H    C G+
Sbjct: 163 HFALRIYRNGTVNYLMRRHLILSCQGR 189


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 546 HQAGSIFRSGRVRTL*REHSTGECAGQ 466
           H A  I+R+G V  L R H    C G+
Sbjct: 214 HFALRIYRNGTVNYLMRRHLILSCQGR 240


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 546 HQAGSIFRSGRVRTL*REHSTGECAGQ 466
           H A  I+R+G V  L R H    C G+
Sbjct: 163 HFALRIYRNGTVNYLMRRHLILSCQGR 189


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 595 HPKTATGKLKAVMMPTTPSGFHFSI 521
           H  T     +A + P TP  F+FS+
Sbjct: 288 HTSTPNFLSEAKIFPPTPGSFNFSM 312


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 319 LLQARAVPPTHATLPV 272
           LL A  +PPT  T+P+
Sbjct: 283 LLLAEIIPPTSLTVPL 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,938
Number of Sequences: 438
Number of extensions: 4567
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)