Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0100
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    36   0.026
SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.42 
SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20)                    30   1.7  
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)                     30   2.2  
SB_6757| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)               29   5.2  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5)                    29   5.2  
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)                   28   6.8  
SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)                   28   9.0  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       28   9.0  
SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)         28   9.0  

>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 492 PLHSDGWSDSDRVGCAIGTSRTAQMKSFFVVCNYGPAGNYLGNIPYKSG 638
           PL    W D+ R+G AI   +     S ++V  Y P GNY G    + G
Sbjct: 335 PLARIVWKDTRRLGVAIARIKRGLWYSTYIVARYSPPGNYNGEFTQQVG 383


>SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 510 WSDSDRVGCAIGTSRTAQMKSFFVVCNYGPAGNYLGNIPYKSGEPSNRLVCGAGDCSK 683
           W+ S  +G    TS +    + FVV  Y P GN +G  P ++ +P      GA +C++
Sbjct: 247 WAGSTEMGAGKATSSSG---AHFVVARYTPPGNVMGQFP-ENVKPKTGGGIGAQECAQ 300


>SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +1

Query: 334 STGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQKTGKKQIAHYTQM 507
           S GENLY   T++       D A++SW++E +NY +     +D+       I H+TQ+
Sbjct: 124 SDGENLYNKGTTSGTVSTCQD-AVDSWYSEIDNYDY-----TDYTNHPGGVIGHFTQI 175


>SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20)
          Length = 191

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 510 WSDSDRVGCAIGTSRTAQMKSFFVVCNYGPAGNY 611
           W D+  +G    TS+  +M   +VV  Y   GN+
Sbjct: 124 WKDTKELGIGTATSKKGRMNCLWVVARYRSGGNF 157


>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
          Length = 147

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 307 DRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKF 441
           + S A  R   GENLY    S    +IN    ++ W++E   YKF
Sbjct: 48  EHSSADSRPGQGENLYMCSPS----EINAGDIVDEWYSEISKYKF 88


>SB_6757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 510 WSDSDRVGCAIGTSRTAQMKSFFVVCNYGPAGNYLG 617
           W  + ++G  IGT++ A+    +VV  + PAGN  G
Sbjct: 3   WKATQKMG--IGTAKNAKGDKEYVVARFSPAGNIKG 36


>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
          Length = 632

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 340 GENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQKTG-KKQIAHYTQM 507
           GEN+Y          IN + A++ W+NE  NY        DF K G +    H+TQ+
Sbjct: 55  GENIY---VQFGQADINGEEAVDKWYNEVNNY--------DFGKPGFQSNTGHFTQV 100


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -3

Query: 439 ICSFHVH*TKIRGRNLG*SCDFYCSSYTSTSSRPLKTFRMLCSCLDYGNHCPTKPTLQLS 260
           +C+F    TK+RG ++    D Y S  ++  S P    +++  CL    H  T    QLS
Sbjct: 682 LCNFEFLLTKLRGTSIQNVLDDYASYLSAKPSDP--DVKLMNECLRLSVHPLTVEPAQLS 739

Query: 259 QLLL 248
             LL
Sbjct: 740 TQLL 743


>SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5)
          Length = 271

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 96  FNLLIVGSYSHYRATIYDSSSTVTICGVNK*PRVKYLDSRQR 221
           F   + GSY+ Y+ T  +S+ +V  C ++  PR+    +  R
Sbjct: 63  FGRSLKGSYASYQLTFPESNFSVFFCDIDSVPRIAITSTADR 104


>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
          Length = 631

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +3

Query: 510 WSDSDRVGCAIGTSRTAQMKSFFVVCNYGPAGNYLGNIPYKSGEP 644
           W D+  VG A   S       F+ V  Y PAGN      +K   P
Sbjct: 323 WRDTTEVGMATAVSLVTN--KFYTVARYKPAGNQGTKDDFKENVP 365


>SB_55473| Best HMM Match : SCP (HMM E-Value=1.6e-22)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 325 ERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKF 441
           +R+  GEN+        +H  +   AL+ W+NE E+Y++
Sbjct: 70  DRYYKGENI-----CRMSHHFDIGDALQIWYNESESYQY 103


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 313 SIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYK 438
           SI S +++  E      + N+N++   D AL  WF +   Y+
Sbjct: 315 SITSTKYNIDEESNGAESGNENNEDEDDEALPQWFRQLSGYE 356


>SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)
          Length = 524

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 385 INPDSALESWFNEHENYKFAPLKSSD 462
           + P   +ESW ++H N+K A L  S+
Sbjct: 226 MEPPLGIESWLDQHMNFKQADLHDSE 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,313,960
Number of Sequences: 59808
Number of extensions: 547477
Number of successful extensions: 1268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)