Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0100
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    28   0.10 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.24 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 478 SQFFESRSILRAQICSFHVH*TKIRGRNLG*SCDFYCSSYTSTSSRPLKTFRM---LCSC 308
           S+  ES  +  +      +H  ++   NLG +C  + S  T+ +   L T      LC+ 
Sbjct: 410 SELVESSVLFPSLDSRDELHPRELEAVNLGSACRIHGSPATTAAPPQLPTEESVDALCNT 469

Query: 307 LDYGNHCP 284
           L + +HCP
Sbjct: 470 LHHWHHCP 477


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 308 SGLWKSLSDEAHFAAFAATPYPKSCISFGSL 216
           SG   S  DE H A+ + TP P  C  F  L
Sbjct: 544 SGSTSSGDDELHRASLSKTPQPPQCPRFRKL 574


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 649 IVSSAAPATAVNLMEINANHYNIYN 723
           I+SS +  T  N    N N+YN YN
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYN 105


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 68  LIFVVALACFQSIDCRKLQPLSCDDIRQFVNG 163
           +I  V +    S +C K QP  CD + ++ NG
Sbjct: 549 IIMTVLILRRASDECNKKQPSDCDTL-EYRNG 579


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 249 RSSCESCKVGFVGQ 290
           RSS +SC+VG + Q
Sbjct: 379 RSSADSCQVGIMAQ 392


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 226 LGRCRLSRYFTLGYLFTPQIVTVDELSYI 140
           LG   L +   LG+L   + V VD+LS++
Sbjct: 235 LGLSWLDQLTNLGFLGMKESVEVDQLSWL 263


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 226 LGRCRLSRYFTLGYLFTPQIVTVDELSYI 140
           LG   L +   LG+L   + V VD+LS++
Sbjct: 273 LGLSWLDQLTNLGFLGMKESVEVDQLSWL 301


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +1

Query: 49  KY-NAVVPYICCRTRVL 96
           KY NA    ICC+TR++
Sbjct: 334 KYRNAFKQTICCKTRII 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,120
Number of Sequences: 438
Number of extensions: 5039
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)