Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0098
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 79 6e-16
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 53 5e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 2e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 43 4e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 43 5e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 9e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 42 9e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 40 3e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 3e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 4e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 40 5e-04
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 38 0.001
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.004
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.004
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.014
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.018
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.032
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.055
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.055
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.073
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 31 0.13
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 31 0.22
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.22
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.29
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.39
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.39
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.6
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 28 1.6
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.7
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 3.6
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 6.3
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 6.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 6.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 8.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 79.0 bits (186), Expect = 6e-16
Identities = 35/94 (37%), Positives = 63/94 (67%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+++++EQ+GE++D VM+D T RS+GFGF+T+ V+E ++ H +DG+I++PKRA
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRA 237
Query: 430 VPREEIKRPEASATVKKLFVAGLKLDMKKKTWES 531
+PREE ++ K+FV G+ D ++ + +
Sbjct: 238 IPREEQEK------TAKMFVGGVPGDCTEEEFRN 265
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRA 429
+ F+ Q+G ++D +M D T R +GFGF+TY V EA ++P+ I G+ VE KRA
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRA 322
Query: 430 VPREEIK 450
P+ ++
Sbjct: 323 TPKASLR 329
Score = 52.8 bits (121), Expect = 5e-08
Identities = 22/69 (31%), Positives = 41/69 (59%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
EE+ +F+ FG ++ +++ DK+TG+ RGFGFV +++ V+ Q I + ++V
Sbjct: 260 EEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEV 319
Query: 693 KKAISKTDM 719
K+A K +
Sbjct: 320 KRATPKASL 328
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/68 (32%), Positives = 41/68 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
++ L +YF FG ++ +V+ D TG+ RGFGF+ F + V+ V + + H + + +D
Sbjct: 176 DDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV-MSKEHHLDGKIIDP 234
Query: 693 KKAISKTD 716
K+AI + +
Sbjct: 235 KRAIPREE 242
Score = 29.5 bits (63), Expect = 0.51
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2
Query: 206 KLFIGGLDYRTTDSSLKN 259
K+FIGGL++ TTD SL++
Sbjct: 164 KMFIGGLNWETTDDSLRD 181
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 185 EEPEHTRKLFIGGLDYRTTDSSLKN 259
EE E T K+F+GG+ T+ +N
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRN 265
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 52.8 bits (121), Expect = 5e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQ-- 680
++EDL FS FG I+S V+ DKETG + F+EFD+ + V++ + QN I D
Sbjct: 256 QDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRI 315
Query: 681 HLDVKKAISK 710
H+D +++++
Sbjct: 316 HVDFSQSVAR 325
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
E+D+ FS FG V +++V DKETGK +GF F++++D
Sbjct: 44 EDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 35.5 bits (78), Expect = 0.008
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVPR 438
+ ++GE VD+ +++D +T +SKGF F+ Y A +N + K+ R+V
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASY 110
Query: 439 EEIKRPEASATVKKLFVAGLKLDM 510
+ ++ + A + L +G L +
Sbjct: 111 KVPQKEKEPANLVPLGESGSSLSV 134
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
E+DL F G+I S+ + TD ++G+ +GFG+V F D D + C++ N
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEMN 427
Score = 39.5 bits (88), Expect = 5e-04
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
+++ LG+ F +G IV V+ D ++G+ +G+G+V+F+
Sbjct: 275 DDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 438
+E++G IV V+ D ++ RSKG+G++ + A N +IDGR+V + PR
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Query: 439 EEIKRPEA 462
+P A
Sbjct: 343 PANPQPYA 350
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 274 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 438
G+I + + DP++ R KGFG++T+S + H I GR + PR
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
+ DL E+F G I V ++T ++TGK +GFGFV+F D D
Sbjct: 241 DADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+KE + Q G+I V +M T + KGFGF+ +
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 209 LFIGGLDYRTTDSSLK 256
LF+G LD+ TTD+ LK
Sbjct: 230 LFVGNLDFETTDADLK 245
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
EE+L + F FG I V + DKETG+ +GF FV + D D
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
Score = 33.1 bits (72), Expect = 0.042
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+++ + ++G I V + KD +T R+KGF F++Y
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 644
+++DL +FS G I VVT+ ETG+ RG+GFV F + R
Sbjct: 17 KQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 426
+ F+ G I VV+ +P+T ++G+GF+T+S A + K+ GRI+
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
Query: 427 AVPREEIKRPEASATVKKLFVAGLKLDMKKK 519
A PR KR E K ++ D + +
Sbjct: 81 ATPR---KRSEVDTDQNKAVKKTIRQDNRPR 108
Score = 29.1 bits (62), Expect = 0.68
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+ Q+G + ++KDP T RS G GFI +
Sbjct: 297 FRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 41.9 bits (94), Expect = 9e-05
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 426
+++ + ++G + V +M++P TK S+GFGF+++S A +N + GR++ ++
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
Query: 427 A 429
A
Sbjct: 177 A 177
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 501 ARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKD 677
+R +E++L + FS FG + V ++ + T RGFGF+ F + N Q
Sbjct: 110 SRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYG 169
Query: 678 QHLDVKKA 701
+ L+V+KA
Sbjct: 170 RVLNVQKA 177
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+E L + FS + ++V VV D+E GK RGFGFV F D D + ++N
Sbjct: 43 DESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKN 91
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
++E L FS FG I S ++TD E GK +GFGFV + + ++ + N ++
Sbjct: 376 DDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 689
E++ + F FG I S+S+V D + K RGFGFV + +++ + + N + K + L
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLY 332
Query: 690 VKKAISK 710
V +A K
Sbjct: 333 VGRAQKK 339
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQHL 686
+ + L + FS FG I+S V D E G +G+GFV FD + + N + D+ +
Sbjct: 180 DNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Query: 687 DVKKAISKTD 716
V +S+ +
Sbjct: 239 YVGHHVSRRE 248
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 426
+K + +G I +M D + K SKGFGF+ Y+ ++A + + G+ +
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 427 AVPREEIKRPEASATVK 477
A R+E++R + A ++
Sbjct: 439 A-QRKEVRRSQLEAQIQ 454
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 656
E+DL F FG + V + DK+T +GF +++F D D R L+
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 668
+E L + FS G +V V E G+ +G+GFV +D ++ D N+Q
Sbjct: 111 DERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 274 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQNNR 387
G++V + + RSKG+GF++Y D EA NN+
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 653
EEE L YF G+I V +V D +T +GF +++F D VD+ L
Sbjct: 282 EEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Score = 33.5 bits (73), Expect = 0.032
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRA 429
++ G I V +++DPKT KGF +I + VD+A K+ +GR + RA
Sbjct: 289 YFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV- 692
E+L +F++ G++ V+++ DK TG +GF ++EF + V L + ++ L V
Sbjct: 69 EELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVT 128
Query: 693 KKAISKTDMSGG 728
K + MS G
Sbjct: 129 PKRTNVPGMSRG 140
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
E DLG++F + S+ +V D T + RGFG+VEF+ D
Sbjct: 107 ENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 271 WGE-IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 447
+GE + + ++ DP T+RS+GFG++ + A + A + GR V A PR
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPRRSF 173
Query: 448 KRPEAS 465
R E S
Sbjct: 174 AREERS 179
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E L +F G + SV + TDK +G+++G+ FVEF
Sbjct: 106 ETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
E+ + E F+ G + + +V D ETG +G+GF EF D
Sbjct: 20 EQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
E + Q G + ++ DP+T KG+GF +
Sbjct: 25 EIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 34.7 bits (76), Expect = 0.014
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
E+ + YFS FG ++ + + +++TG + + F+EF+ D
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
EE + + F G + S +V D E+G+ +G+GF E+ D
Sbjct: 18 EEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 384
+ ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 23 DIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.5 bits (73), Expect = 0.032
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++E + ++G I + P T+ SKG+GF+++S +A N ++G + KR
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINT----LNGVLFGKKRL 492
Query: 430 VPREEIKRPEASATVKKLF 486
KR + + +F
Sbjct: 493 FVNYAEKREDRKKRLSAIF 511
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+ L E FS FG I S ++ + T +G+GFV F
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.7 bits (71), Expect = 0.055
Identities = 21/99 (21%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++ F+ +G++ V + K + + KGFG++ + + A + ++ R++ +
Sbjct: 773 VETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLS 830
Query: 430 VPREEIKRPEASA----TVKKLF--VAGLKLDMKKKTWE 528
PRE +++ S+ T+ K F K+ KK++E
Sbjct: 831 KPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFE 869
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.055
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 531 YFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKDQHLDVKKAIS 707
+ S + + S ++TD +T RG+GFV F D+ D + Q D+ + V A
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP 265
Query: 708 KT 713
K+
Sbjct: 266 KS 267
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 351
F ++ +M DP+T S+G+GF+ ++
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.073
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 426
+K++++QWG ++ V V+KD + + F+ + +A + + I DGR + +R
Sbjct: 99 VKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIER 155
Query: 427 AVPREEIK 450
A I+
Sbjct: 156 AKVNRTIR 163
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -2
Query: 726 RQTCQFSILLFSHPNVDL*FGDFVASILCQLDHNHQTLQNQSPFSFQFLYLS 571
R F L F+H +L FG++ +++ LD H N PF+FQ+ YLS
Sbjct: 178 RSNIPFHSLNFTHYIEELSFGEYYPALVNALD-GHYGHANDHPFAFQY-YLS 227
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+K +E +G+I V + +D + RSKGFG+I Y
Sbjct: 356 VKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
+F+EQ G + D +++D + RSKG ++ + V A
Sbjct: 258 DFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
+E+L Y + FG + S + D ET +G+GF F++
Sbjct: 309 DENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 534 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
F FG I+SV++ KE R + FVEFD+ + N+ I
Sbjct: 26 FIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+ L + FS FG+I+S + +G +G+GFV F
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 426
+++ + +G I+ ++ P + SKG+GF+ + Q A++ ++G +V KR
Sbjct: 400 LEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDT----LNGMMVGKKR 454
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.39
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 582 ETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKKAISKTD 716
E + RGFGFV F + + R + N Q+ D L VK A+ + D
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E+ + E FG+++S ++ + G +GF F EF
Sbjct: 323 EDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
+ +L + F+ G+++ + + TG+ +GFG V+F++
Sbjct: 293 DRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFEN 329
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 598 LFFPVSLSVTTLTETIFPNVLKYSPKSSSSCLASVQLQTT 479
+++PVS S TT T T +V S +++SC + +T
Sbjct: 743 VYYPVSSSSTTTTSTSTGSVTTTSTTATASCTLPISYTST 782
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 534 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
++T + +V+++ +KET K R F F +F
Sbjct: 92 YATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQHLDVKK 698
L F ++G ++ V ++T + RG FV FD+ + R Q + + + + ++
Sbjct: 46 LEHLFGSYGKVIDVQA---RKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQY 102
Query: 699 AISKTDM 719
+ SK+D+
Sbjct: 103 SKSKSDI 109
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 349 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLK 501
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 161 PSESGDDYEEPEHTRKLFI 217
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 307 PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 480
P+T+ S+ F F+ Y + ++A +++ GR +E V R E K+P S K
Sbjct: 41 PRTRTSRPFAFVEYEDSRDAEDAY----YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 483 QLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGLRICNK 337
QL SF +F +F + L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,305
Number of Sequences: 5004
Number of extensions: 60576
Number of successful extensions: 246
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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