Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0098
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 72 3e-13
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 69 2e-12
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 69 2e-12
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 69 2e-12
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 69 3e-12
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 68 6e-12
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 68 6e-12
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 66 2e-11
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 65 4e-11
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 65 4e-11
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 65 4e-11
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 65 5e-11
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 64 7e-11
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 63 2e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 60 1e-09
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 59 3e-09
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 56 3e-08
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 52 5e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 51 9e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 51 9e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 51 9e-07
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 51 9e-07
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 51 9e-07
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 51 9e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 50 2e-06
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 49 3e-06
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 49 4e-06
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 49 4e-06
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 49 4e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 48 5e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 5e-06
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 48 5e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 48 5e-06
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 48 5e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 6e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 48 8e-06
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 47 1e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 46 2e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 46 2e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 46 3e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 3e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 3e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 46 3e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 46 3e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 46 3e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 45 4e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 45 4e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 45 4e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 44 8e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 44 8e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 44 1e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 44 1e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 1e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 2e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 42 3e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 42 3e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 42 3e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 4e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 42 6e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 42 6e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 41 7e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 41 7e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 41 7e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 41 0.001
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 40 0.001
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 40 0.001
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 40 0.001
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 40 0.002
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 40 0.002
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 40 0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 40 0.002
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 0.002
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 0.002
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.003
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 39 0.003
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.003
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 39 0.004
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 39 0.004
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 39 0.004
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 39 0.004
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 39 0.004
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 39 0.004
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 39 0.004
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.005
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.005
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.005
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 38 0.005
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 38 0.007
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 38 0.007
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.007
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 38 0.007
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 38 0.007
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.007
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 38 0.009
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.009
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 38 0.009
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.009
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 38 0.009
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 38 0.009
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 38 0.009
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 38 0.009
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 37 0.012
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 37 0.016
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 37 0.016
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.016
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 37 0.016
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 37 0.016
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 0.021
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.021
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 36 0.028
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.028
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.028
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.036
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.036
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.036
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 35 0.048
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.048
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.048
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.048
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 35 0.048
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 35 0.064
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 35 0.064
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 35 0.064
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 35 0.064
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.064
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.064
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.064
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.084
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 34 0.084
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.11
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 34 0.11
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.11
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 34 0.11
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 34 0.11
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.19
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 33 0.19
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.26
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 32 0.34
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 32 0.34
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 32 0.34
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 32 0.34
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 32 0.34
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 32 0.34
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 32 0.45
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 32 0.45
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 32 0.45
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.45
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.45
At2g47310.1 68415.m05906 flowering time control protein-related ... 31 0.78
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 1.0
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 30 1.4
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 1.4
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 1.4
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 30 1.8
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 29 2.4
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 2.4
At1g48880.1 68414.m05476 hypothetical protein 29 2.4
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 3.2
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 3.2
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 29 3.2
At1g41855.1 68414.m04833 hypothetical protein 29 3.2
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 29 4.2
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 29 4.2
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 4.2
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 4.2
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 4.2
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 5.5
At5g13655.1 68418.m01588 hypothetical protein 28 5.5
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 5.5
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 5.5
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 28 5.5
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 28 7.3
At4g38440.1 68417.m05432 expressed protein 28 7.3
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 28 7.3
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/71 (47%), Positives = 49/71 (69%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+E L EYFS FG ++ V+V+ +K TG+ RGFGFV F D +DRV LQ H I ++ +D
Sbjct: 18 DENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV-LQDKHHIDNRDVD 76
Query: 690 VKKAISKTDMS 722
VK+A+S+ + S
Sbjct: 77 VKRAMSREEQS 87
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++E++ +GE++ V VM++ T R +GFGF+ +S ++D ++ H ID R V+ KRA
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK-HHIDNRDVDVKRA 80
Query: 430 VPREEIKRPEASAT--VKKLFVAGLKLDMKK 516
+ REE S T + F +G + KK
Sbjct: 81 MSREEQSPAGRSGTFNASRNFDSGANVRTKK 111
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/63 (34%), Positives = 40/63 (63%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
+ ++E +G + D V+M D T+R +GFGF+++ VD + H ++G+ VE KRA+
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRAL 186
Query: 433 PRE 441
P++
Sbjct: 187 PKD 189
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
++ YF T+G + ++ D+ T + RGFGFV FD D VD V + H + + ++VK
Sbjct: 124 DEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
Query: 696 KAISK 710
+A+ K
Sbjct: 184 RALPK 188
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 433 PRE 441
P+E
Sbjct: 187 PKE 189
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
EE+ YF FG I V V+ D T + RGFGF+ FD D VDRV + H++ + ++V
Sbjct: 123 EEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEV 182
Query: 693 KKAISK 710
K+A+ K
Sbjct: 183 KRAVPK 188
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/65 (40%), Positives = 44/65 (67%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 430 VPREE 444
VPR++
Sbjct: 81 VPRDD 85
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+EE L +YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + H I + ++
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRTVE 76
Query: 690 VKKAISKTD 716
KKA+ + D
Sbjct: 77 AKKAVPRDD 85
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 433 PRE 441
P+E
Sbjct: 187 PKE 189
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
EE+ YF FG I V V+ D T + RGFGF+ FD D VDRV + H++ + ++V
Sbjct: 123 EEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEV 182
Query: 693 KKAISK 710
K+A+ K
Sbjct: 183 KRAVPK 188
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/65 (40%), Positives = 44/65 (67%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 430 VPREE 444
VPR++
Sbjct: 81 VPRDD 85
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+EE L +YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + H I + ++
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRTVE 76
Query: 690 VKKAISKTD 716
KKA+ + D
Sbjct: 77 AKKAVPRDD 85
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 433 PRE 441
P+E
Sbjct: 187 PKE 189
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
EE+ YF FG I V V+ D T + RGFGF+ FD D VDRV + H++ + ++V
Sbjct: 123 EEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEV 182
Query: 693 KKAISK 710
K+A+ K
Sbjct: 183 KRAVPK 188
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/65 (40%), Positives = 44/65 (67%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+++++ +G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80
Query: 430 VPREE 444
VPR++
Sbjct: 81 VPRDD 85
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+EE L +YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + H I + ++
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRTVE 76
Query: 690 VKKAISKTD 716
KKA+ + D
Sbjct: 77 AKKAVPRDD 85
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K +++Q+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAV
Sbjct: 139 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAV 198
Query: 433 PRE 441
P+E
Sbjct: 199 PKE 201
Score = 61.7 bits (143), Expect = 5e-10
Identities = 25/65 (38%), Positives = 47/65 (72%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++E++ ++G++V+ V+M+D T R++GFGFI ++ + + ++ H IDGR VE K+A
Sbjct: 31 LQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK-HIIDGRTVEAKKA 89
Query: 430 VPREE 444
VPR++
Sbjct: 90 VPRDD 94
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+EE L EYF +G++V ++ D+ TG+ RGFGF+ F D +RV + H I + ++
Sbjct: 27 DEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV-IMDKHIIDGRTVE 85
Query: 690 VKKAISKTD 716
KKA+ + D
Sbjct: 86 AKKAVPRDD 94
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E + YF FG I V V+ D T + RGFGF+ FD + VD V + H++ + ++V
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEV 194
Query: 693 KKAISK 710
K+A+ K
Sbjct: 195 KRAVPK 200
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K ++EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE KRAV
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAV 184
Query: 433 PREEIKRPEAS 465
P+E P S
Sbjct: 185 PKELSPGPSRS 195
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/65 (41%), Positives = 45/65 (69%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+KE++ +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 430 VPREE 444
VPR++
Sbjct: 81 VPRDD 85
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/70 (38%), Positives = 43/70 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
EE L EYFS+FG ++ ++ D+ TG+ RGFGFV F D V + + + H I + ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNIDGRLVEA 77
Query: 693 KKAISKTDMS 722
KKA+ + D +
Sbjct: 78 KKAVPRDDQN 87
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/72 (36%), Positives = 43/72 (59%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E D YF FG V V+ D T + RGFGF+ +D + V++V L+ H++ + ++V
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 693 KKAISKTDMSGG 728
K+A+ K ++S G
Sbjct: 181 KRAVPK-ELSPG 191
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 191 PEHTRKLFIGGLDYRTTDSSLK 256
P TRK+F+GGL T+S K
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFK 125
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K ++EQ+G DVVVM D T+R +GFGFITY V++ H+++G++VE KRAV
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAV 184
Query: 433 PREEIKRPEAS 465
P+E P S
Sbjct: 185 PKELSPGPSRS 195
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/65 (41%), Positives = 45/65 (69%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+KE++ +GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 430 VPREE 444
VPR++
Sbjct: 81 VPRDD 85
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/70 (38%), Positives = 43/70 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
EE L EYFS+FG ++ ++ D+ TG+ RGFGFV F D V + + + H I + ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNIDGRLVEA 77
Query: 693 KKAISKTDMS 722
KKA+ + D +
Sbjct: 78 KKAVPRDDQN 87
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/72 (36%), Positives = 43/72 (59%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E D YF FG V V+ D T + RGFGF+ +D + V++V L+ H++ + ++V
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 693 KKAISKTDMSGG 728
K+A+ K ++S G
Sbjct: 181 KRAVPK-ELSPG 191
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 191 PEHTRKLFIGGLDYRTTDSSLK 256
P TRK+F+GGL T+S K
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFK 125
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 66.1 bits (154), Expect = 2e-11
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +1
Query: 247 FIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 423
F+K F ++GEI D V+MKD KT + +GFGF+TY+ + +VD+ Q+N H I G+ VE K
Sbjct: 58 FLKHF-GKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIK 114
Query: 424 RAVPREEIKRPEASATVKKLFVAGL 498
R +PR + + KK+FV G+
Sbjct: 115 RTIPRGSMSSNDFK--TKKIFVGGI 137
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPKR 426
KEF+ Q+GE+ + +M+D T RS+GFGF+TY MVD A+ NR ++ G VE K+
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR-IELSGTQVEIKK 205
Query: 427 AVPREEIKRPEASATVKKLF 486
A P K+P + T K F
Sbjct: 206 AEP----KKPNSVTTPSKRF 221
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = +3
Query: 528 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAIS 707
++F +G I ++ D++TG+ RGFGFV + D VD+V +Q NH I + +++K+ I
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV-IQDNHIIIGKQVEIKRTIP 118
Query: 708 KTDMS 722
+ MS
Sbjct: 119 RGSMS 123
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHL 686
++++ E+F FG + ++ D TG+ RGFGFV ++ D VD + + N ++ +
Sbjct: 142 DDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQV 201
Query: 687 DVKKAISK 710
++KKA K
Sbjct: 202 EIKKAEPK 209
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 109
Query: 433 PRE 441
P++
Sbjct: 110 PKD 112
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E + +YF+ FG I V V+ D T + RGFGF+ +D + VD+V + H++ + ++V
Sbjct: 46 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 105
Query: 693 KKAISKTDMS 722
K A+ K DM+
Sbjct: 106 KLAVPK-DMA 114
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 433 PRE 441
P++
Sbjct: 183 PKD 185
Score = 62.1 bits (144), Expect = 4e-10
Identities = 24/65 (36%), Positives = 47/65 (72%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80
Query: 430 VPREE 444
VPR++
Sbjct: 81 VPRDD 85
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E+ L +YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L + H I + ++
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEA 77
Query: 693 KKAISKTD 716
KKA+ + D
Sbjct: 78 KKAVPRDD 85
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E + +YF+ FG I V V+ D T + RGFGF+ +D + VD+V + H++ + ++V
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 693 KKAISKTDMS 722
K A+ K DM+
Sbjct: 179 KLAVPK-DMA 187
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 433 PRE 441
P++
Sbjct: 183 PKD 185
Score = 62.1 bits (144), Expect = 4e-10
Identities = 24/65 (36%), Positives = 47/65 (72%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80
Query: 430 VPREE 444
VPR++
Sbjct: 81 VPRDD 85
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E+ L +YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L + H I + ++
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEA 77
Query: 693 KKAISKTD 716
KKA+ + D
Sbjct: 78 KKAVPRDD 85
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E + +YF+ FG I V V+ D T + RGFGF+ +D + VD+V + H++ + ++V
Sbjct: 119 EAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEV 178
Query: 693 KKAISKTDMS 722
K A+ K DM+
Sbjct: 179 KLAVPK-DMA 187
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 64.9 bits (151), Expect = 5e-11
Identities = 31/94 (32%), Positives = 56/94 (59%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+K++ ++G++ D +VMKD T RS+GFG++T++ A A H + RI+E K A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE-HFLGNRILEVKVA 77
Query: 430 VPREEIKRPEASATVKKLFVAGLKLDMKKKTWES 531
P+EE+++P T ++FVA + + + + S
Sbjct: 78 TPKEEMRQPAKKVT--RIFVARIPSSVSESDFRS 109
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
+ +E++GEI D+ + KD +K+ +G GFIT+S A V++ + H + G V RA
Sbjct: 108 RSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED-THDLGGTTVAVDRAT 166
Query: 433 PREEIKRP 456
P+E+ P
Sbjct: 167 PKEDDHPP 174
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+++++ ++G I D + KDPK +GFGF+T+++ + D R H+I G+ V A
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEICGQEVAIDSA 314
Query: 430 VPREEIKRPEASAT 471
P +E P A A+
Sbjct: 315 TPLDE-AGPSAGAS 327
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+ + L +Y S FG++ V+ D+ TG+ RGFG+V F + + L+ H + ++ L+
Sbjct: 15 DSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA-KNALKGEHFLGNRILE 73
Query: 690 VKKAISKTDM 719
VK A K +M
Sbjct: 74 VKVATPKEEM 83
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
+DL +YF FG+I + D + RGFGFV F + DRV +++H+I Q + +
Sbjct: 254 DDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEICGQEVAID 312
Query: 696 KA 701
A
Sbjct: 313 SA 314
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 64.5 bits (150), Expect = 7e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+E+ L E+F+ +G + V+ DK TG+ RGFGFV F D +DRV LQ+ H I + +D
Sbjct: 18 DEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV-LQEKHSIDTREVD 76
Query: 690 VKKAISKTD 716
VK+A+S+ +
Sbjct: 77 VKRAMSREE 85
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/72 (36%), Positives = 43/72 (59%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
+E+ +YF +G + V+++ D+ T + RGFGFV FD D VD V + H + + ++V
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEV 182
Query: 693 KKAISKTDMSGG 728
K+A+ K GG
Sbjct: 183 KRALPKDANPGG 194
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
++++E +G + DV +M D T R +GFGF+++ VD + H + G+ VE KRA+
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186
Query: 433 PRE 441
P++
Sbjct: 187 PKD 189
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/65 (38%), Positives = 40/65 (61%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++E + +GE+ +VM+D T R +GFGF+ +S ++D + H ID R V+ KRA
Sbjct: 22 LREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK-HSIDTREVDVKRA 80
Query: 430 VPREE 444
+ REE
Sbjct: 81 MSREE 85
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 149 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLK 256
LN S GD Y + T+K+F+GGL TD +
Sbjct: 95 LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFR 127
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 432
K ++E++G DVVVM D T R +GFGF+TY V+ + H++ + VE KRA+
Sbjct: 137 KSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAI 196
Query: 433 PREEIKRPEASA 468
P+E I+ +A
Sbjct: 197 PKEGIQSNNGNA 208
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +3
Query: 477 KVVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 656
K+ + EE+ YF FG V V+ D T + RGFGFV +D D V+ V
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 657 QNHQIKDQHLDVKKAISK 710
H++ D+ ++VK+AI K
Sbjct: 181 NFHELSDKRVEVKRAIPK 198
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKDQHLD 689
EE L +YFS +G ++ V +K TGK RGFGFV F +D D V L+ H I + +D
Sbjct: 19 EEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK--ALRDTHFILGKPVD 76
Query: 690 VKKAISKTDM 719
V+KAI K ++
Sbjct: 77 VRKAIRKHEL 86
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/66 (27%), Positives = 42/66 (63%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+K+++ ++G +++ VV K+ T + +GFGF+ ++ V +A + H I G+ V+ ++A
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD-THFILGKPVDVRKA 80
Query: 430 VPREEI 447
+ + E+
Sbjct: 81 IRKHEL 86
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 441
+ ++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKG 97
Query: 442 EIKRPEASATVKKLFVAGL 498
KK+FV G+
Sbjct: 98 AGGNQSKDIKTKKIFVGGI 116
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 689
E++L ++F+ +GN+V V+ D ET + RGFGFV FD + VD + + N + D ++
Sbjct: 122 EDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVE 181
Query: 690 VKKAISKTDMS 722
+KKA K ++
Sbjct: 182 IKKAEPKKSLN 192
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPK 423
+K+F+ ++G +V+ V++D +T RS+GFGF+ + +VDE ++ N D + VE K
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQ-VEIK 183
Query: 424 RAVPREEIKRPEAS 465
+A P++ + R S
Sbjct: 184 KAEPKKSLNRSPPS 197
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +3
Query: 528 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAIS 707
++F +G I ++ D+ TG+ RGFGF+ F D VD+V ++ H I + +++K+ I
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IEDTHVINGKQVEIKRTIP 95
Query: 708 K 710
K
Sbjct: 96 K 96
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 441
+ ++GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKG 97
Query: 442 EIKRPEASATVKKLFVAGL 498
KK+FV G+
Sbjct: 98 AGGNQSKDIKTKKIFVGGI 116
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
E++L ++F+ +GN+V V+ D ET + RGFGFV FD + VD + + N
Sbjct: 122 EDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +3
Query: 528 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAIS 707
++F +G I ++ D+ TG+ RGFGF+ F D VD+V ++ H I + +++K+ I
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IEDTHVINGKQVEIKRTIP 95
Query: 708 K 710
K
Sbjct: 96 K 96
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/41 (39%), Positives = 30/41 (73%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 372
+K+F+ ++G +V+ V++D +T RS+GFGF+ + +VDE
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQHL 686
EE++L YF +G+I+ ++ D TG+ RGFGFV F D VDR+ + H++ D+ +
Sbjct: 169 EEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQV 228
Query: 687 DVKKAISK 710
++K+A K
Sbjct: 229 EIKRAEPK 236
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
E YF FG +V ++TD+ TG RGFGFV F D ++V L+++H I D+ +D+K
Sbjct: 80 ETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV-LEEDHVIDDRKVDLK 138
Query: 696 KAISKTD 716
+ + + D
Sbjct: 139 RTLPRGD 145
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 438
++ ++GE+VD V+M D T +GFGF+T++ + V E H ID R V+ KR +PR
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLEEDHVIDDRKVDLKRTLPR 143
Query: 439 -EEIKRPEASATVKKLFVAGL 498
++ +A + +K+FV GL
Sbjct: 144 GDKDTDIKAVSKTRKIFVGGL 164
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
+K ++ +G+I++ +M D T RS+GFGF+T+ VD + + H++ + VE KR
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKR 232
Query: 427 AVPR 438
A P+
Sbjct: 233 AEPK 236
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++ ++EQ+GEIV+ VV+ D T RSKG+GF+T+ +A A N IDGR A
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLA 97
Query: 430 VPREEIKRPEAS 465
+ RP S
Sbjct: 98 CLGAQKPRPPTS 109
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+ + + YF FG IV V+TDK TG+ +G+GFV F + + R C N
Sbjct: 34 QRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++E++GEIV V+ D T+RSKGFGF+T+ + A N H IDGR V K A
Sbjct: 28 YFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
E L YF FG IV VV D T + +GFGFV F + + R C NH I + ++ K
Sbjct: 23 EGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCK 82
Query: 696 KA 701
A
Sbjct: 83 LA 84
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
+E L +F FG I+ V+VV D+ET + +G+GFV F D + R C N I+ + +
Sbjct: 26 KEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNC 85
Query: 693 KKA 701
K A
Sbjct: 86 KLA 88
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 438
F++++GEI+ V V+ D +T RS+G+GF+T+ A A + I+GRI K A
Sbjct: 32 FFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLAFVG 91
Query: 439 EEIK 450
++K
Sbjct: 92 AKVK 95
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQHLD 689
+EDL FS FG+++ ++ D+E+G+ RGFGFV F D + D + ++ + +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 690 VKKAISKTDMSGG 728
V +A S+ GG
Sbjct: 79 VNEAQSRGSGGGG 91
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 426
++ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 427 AVPR 438
A R
Sbjct: 82 AQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQHLD 689
+EDL FS FG+++ ++ D+E+G+ RGFGFV F D + D + ++ + +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 690 VKKAISKTDMSGG 728
V +A S+ GG
Sbjct: 79 VNEAQSRGSGGGG 91
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 426
++ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 427 AVPR 438
A R
Sbjct: 82 AQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQHLD 689
+EDL FS FG+++ ++ D+E+G+ RGFGFV F D + D + ++ + +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 690 VKKAISKTDMSGG 728
V +A S+ GG
Sbjct: 79 VNEAQSRGSGGGG 91
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 426
++ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 427 AVPR 438
A R
Sbjct: 82 AQSR 85
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 238 HRFFIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
H+ +K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 653
+E + ++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 238 HRFFIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
H+ +K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 653
+E + ++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 238 HRFFIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
H+ +K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 653
+E + ++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +1
Query: 238 HRFFIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
H+ ++ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 653
L YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +1
Query: 238 HRFFIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
H+ ++ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 653
L YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+++ YF FG I+ ++TDK TGK +G+GFV F D D R N
Sbjct: 31 DEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/53 (33%), Positives = 34/53 (64%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
++ +++Q+GEI++ V++ D T +SKG+GF+T+ + A + IDGR
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
+E+DL + FS FGN++ ++ D++TGK R FGFV F++
Sbjct: 19 DEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
Score = 32.3 bits (70), Expect = 0.34
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
+ + + ++G ++D ++ D T +S+ FGF+T+ + + +A
Sbjct: 23 LTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+++ YF FG I+ ++TDK TGK +G+GFV F + D R N
Sbjct: 31 DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+++ YF FG I+ ++TDK TGK +G+GFV F + D R N
Sbjct: 31 DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 653
+ E L +F +G+I+ V+TDK TG+ +G+GFV F D + R C+
Sbjct: 36 QSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
++ ++Q+G+I++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 48.4 bits (110), Expect = 5e-06
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
+EDL FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 37.1 bits (82), Expect = 0.012
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
++ + Q+G+++D ++ D ++ RS+GFGF+T+ + +A
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPK 423
++E + +G +VD +VM+D T RS+GFGF+TYS + A + K ++GR V K
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 641
++ L E FS +GN+V V+ D+ T + RGFGFV + + +
Sbjct: 16 DDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 686
++ L + F+ FG++V V+ D+ETG+ RGFGFV F+D + + ++ +H+
Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106
Query: 687 DVKKA 701
V A
Sbjct: 107 RVNPA 111
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 426
+++ + +G++VD V+ D +T RS+GFGF+ ++ A + K ++GR +
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 427 AVPREEIKR 453
A R R
Sbjct: 111 ANDRPSAPR 119
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 206 KLFIGGLDYRTTDSSLKNSMSN 271
KLFIGGL + T D+SL+++ ++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 686
++ L + F+ FG++V V+ D+ETG+ RGFGFV F+D + + ++ +H+
Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106
Query: 687 DVKKA 701
V A
Sbjct: 107 RVNPA 111
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 426
+++ + +G++VD V+ D +T RS+GFGF+ ++ A + K ++GR +
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 427 AVPREEIKR 453
A R R
Sbjct: 111 ANDRPSAPR 119
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 206 KLFIGGLDYRTTDSSLKNSMSN 271
KLFIGGL + T D+SL+++ ++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQ--- 680
E+EDL FS FG +VS V+ D +TG + F+EF++ + ++ + ++ + D
Sbjct: 255 EDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRI 314
Query: 681 HLDVKKAISK 710
H+D +++SK
Sbjct: 315 HVDFSQSVSK 324
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 414
+KE + +G+IVD VV+ D ++ S+GFGF+TY + + A +K +DGRI+
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC-LQQNHQIKDQHLDV 692
E L E F +FG IV VV D+E+G RGFGFV +D + + QN ++ + + V
Sbjct: 50 ELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
Query: 693 KKAISKTDMSGG 728
A S GG
Sbjct: 110 HPADSGGGGGGG 121
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
+++ +EQ+GEI++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 650
+ E L ++F +G I+ V+ DK TG+ +G+GFV F D + R C
Sbjct: 36 QSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++ + +G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 430 VPREEIKRPE-ASATVKKLFVAGLKLDM 510
+ + A +++K++VA + DM
Sbjct: 151 ASGNQGTGSQIADISMRKIYVANVPFDM 178
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
E L FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 89 EGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 531 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAI 704
+F +G++ + DK TGK RGF + + I +HL+ K A+
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++ + +G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 430 VPREEIKRPE-ASATVKKLFVAGLKLDM 510
+ + A +++K++VA + DM
Sbjct: 151 ASGNQGTGSQIADISMRKIYVANVPFDM 178
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
E L FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 89 EGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 531 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAI 704
+F +G++ + DK TGK RGF + + I +HL+ K A+
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KDQHLDVKK 698
L + F FGNIVS V T E GK RG+GFV+F+ D N I D+ + V K
Sbjct: 128 LQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186
Query: 699 AISKTD 716
+ KTD
Sbjct: 187 FMKKTD 192
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD-DYDPVDRVCLQQNHQIKDQHLD 689
EE+L ++FS G I S ++ D E GK +GFGFV F + +D V + L
Sbjct: 317 EEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLY 375
Query: 690 VKKAISKTD 716
V A K D
Sbjct: 376 VAIAQKKED 384
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 498 EARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 644
+A E+ L E F+ FG IVS+++ D E RG+ FV FD+ + R
Sbjct: 209 DADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR 256
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 351
+++ + Q G I +M D K K SKGFGF+ +S
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+E+ L E F+ +G +V V+ D+ETG+ RGFGFV F
Sbjct: 52 DEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
++E + ++GE+VD V+ D +T RS+GFGF+T++ + A Q + GR+V+
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
Query: 427 AVPR 438
A R
Sbjct: 116 ANDR 119
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 689
E+ L E FS G +V +V D+ + + +GFGFV F D + ++ N Q+ + +
Sbjct: 47 EQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIF 106
Query: 690 VKKAISKTDMSGG 728
V A +K + GG
Sbjct: 107 VDYAKAKQSLGGG 119
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 378
+ E + + G++V+ ++ D + RSKGFGF+T++ A DEAQ
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 689
+ DL FS FG+I+ ++ +++TG+ RGFGF+ F D +D + + D+ +
Sbjct: 20 DRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVIS 79
Query: 690 VKKAISKTDMSGG 728
V +A K G
Sbjct: 80 VNRAEPKLGRDDG 92
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
++ + ++G+I+D +M + T RS+GFGFIT++ +DE+ + R++ R
Sbjct: 23 LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNR 82
Query: 427 AVPR 438
A P+
Sbjct: 83 AEPK 86
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
++ L + F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 47 DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
+K+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 206 KLFIGGLDYRTTDSSLKNSMSN 271
KLF+GGL + T DSSLK + ++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTS 57
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
++ L + F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 47 DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
+K+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 206 KLFIGGLDYRTTDSSLKNSMSN 271
KLF+GGL + T DSSLK + ++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTS 57
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD-QHL 686
++ L F+ +G+++ ++ D+ETG+ RGFGFV F D + N Q D + +
Sbjct: 20 DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79
Query: 687 DVKKAISKTDMSGG 728
V +A S+ GG
Sbjct: 80 TVNEAQSRGSGGGG 93
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 438
+ Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR + A R
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD-QHL 686
++ L F+ +G+++ ++ D+ETG+ RGFGFV F D + N Q D + +
Sbjct: 20 DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79
Query: 687 DVKKAISKTDMSGG 728
V +A S+ GG
Sbjct: 80 TVNEAQSRGSGGGG 93
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 438
+ Q+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR + A R
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+E L E FS +G +V ++ D+ETG+ RGF FV F + + + +
Sbjct: 46 DEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIR 105
Query: 690 VKKAISKTDMSGG 728
V A + GG
Sbjct: 106 VNYATERGSGFGG 118
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 244 FFIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 423
F ++E + ++GE+VD ++ D +T RS+GF F+T++ A + GR +
Sbjct: 48 FGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVN 107
Query: 424 RAVPR 438
A R
Sbjct: 108 YATER 112
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
+++ +E++G +V+ V+ D + RS+GFGFIT+ + +DEA +DGR + +
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 427 AVPRE 441
A P +
Sbjct: 83 AQPHQ 87
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 489 SWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+WT + + L + F +G++V VV DK +G+ RGFGF+ FD+ +D N
Sbjct: 15 AWTTS---DRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 504 RHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
R +DL YF FG +V +VV++ G+ +G+GF+ F DY R LQ + I D
Sbjct: 22 RTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR-ALQNSKPIID 78
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGR 408
++ ++EQ+G++VD V+ + RSKG+GFIT+ V QN++P IDGR
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKP-IIDGR 80
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
E L + F++FG +V V+TD+++G+ +GFGFV + + ++ + N + D
Sbjct: 48 EKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLD 101
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 426
+++ + +G++VD V+ D + RSKGFGF+TY+ ++A+ K +DG ++
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDP 109
Query: 427 AVPREEIKRP 456
A PRE +RP
Sbjct: 110 ARPREP-RRP 118
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 689
++DL F +G I S V+ D E GK +GFGFV F++ D R N H+ D+
Sbjct: 42 DDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWY 100
Query: 690 VKKAISKTD 716
V +A K++
Sbjct: 101 VGRAQKKSE 109
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
+K + ++G+I VVMKD + K SKGFGF+ + A A ++ HK D + R
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 103
Query: 427 AVPREE 444
A + E
Sbjct: 104 AQKKSE 109
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 423
+KE + +G + VM+DP SKG GF+ ++ EA + ++ G+++E K
Sbjct: 148 LKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS----QLSGKMIESK 200
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+E+ L + FS+FG + V + DK +G+ RGFGFV+F
Sbjct: 53 DEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 354
+K+ + +GE+ +V + D + RS+GFGF+ +++
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 686
E ++ +FS FG + V V +K+TGK + FGF++F+D + + N + +H+
Sbjct: 73 ETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHM 130
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQNN---RPHKIDGRI 411
I+ F+ Q+G + V V ++ KT +SK FGFI + A + A N+ H + +
Sbjct: 76 IEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHV 135
Query: 412 VEPKRAVP 435
+EP+ P
Sbjct: 136 IEPENVKP 143
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 641
L + FS G +V VV D+ETG+ RGFGFV D D ++
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
+++ + + G++V+ V+ D +T RS+GFGF+T S ++EA
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 438
+EQ G + V+ + +T +S+GFGF+T S + A + + ++GR++ +A PR
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
Query: 439 EEIKRPEASATV 474
RPE + V
Sbjct: 230 G--SRPERAPRV 239
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKK 698
L F G + V+ ++ET + RGFGFV D + + N + + + L V K
Sbjct: 166 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNK 225
Query: 699 A 701
A
Sbjct: 226 A 226
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/57 (31%), Positives = 35/57 (61%)
Frame = +1
Query: 238 HRFFIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
H+ + + + ++G+I++ V++ D T+RSKG+GF+T+ A A + I+GR
Sbjct: 29 HKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGR 85
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 650
+E + ++F +G+I+ +++DK T + +G+GFV F D R C
Sbjct: 30 KEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 426
+++ + +G+I + +++D +T+R KGFGFIT+ +A + KI DGR++ +
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV 82
Query: 427 AVPREEIK 450
A EE++
Sbjct: 83 AKNAEEVR 90
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 686
++ L + FS FG I ++ D ET + +GFGF+ FD D + + +I D L
Sbjct: 20 DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRL 77
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
EE L E G +VS +VTD+ETGK +G+GF E+ D
Sbjct: 22 EEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKD 59
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 689
+ + L +FS FG IVS V+ D++TG+ R F F+ F + D Q + + +
Sbjct: 224 QPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRII 283
Query: 690 VKKAISKTD 716
V++ I K++
Sbjct: 284 VREGIEKSE 292
Score = 34.3 bits (75), Expect = 0.084
Identities = 19/71 (26%), Positives = 38/71 (53%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++ + ++G IV V+ D KT R++ F F++++ D A + +G E +R
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-----FNGTQYEGRRI 282
Query: 430 VPREEIKRPEA 462
+ RE I++ E+
Sbjct: 283 IVREGIEKSES 293
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 528 EYFSTFGNIVSVSVVTDKETGKKRGFGFV 614
+ F FG ++SV V + +TG+ RG G+V
Sbjct: 126 DMFQPFGTVISVEVSRNPQTGESRGSGYV 154
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 345
+ ++ +G ++ V V ++P+T S+G G++T
Sbjct: 126 DMFQPFGTVISVEVSRNPQTGESRGSGYVT 155
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
E DL FS +G IV V+++ DK TGK +GF F+ ++D
Sbjct: 49 EGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 384
+ Q+GEIVDV +++D T +SKGF F+ Y A +N
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 668
+E L + FS+F + V+T+K TG+ RG+GFV F D + N Q
Sbjct: 43 DEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+K+ + + + + VM + T RS+G+GF+ +
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 641
L FS G +V VV+D+ETG+ RGFGFV+ + + V+
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +1
Query: 262 YEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAV 432
+EQ G EI +V+ +D T +S+GFGF+T S ++A + +++GR + RA
Sbjct: 133 FEQAGTVEISEVIYNRD--TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAA 190
Query: 433 PR--EEIKRPEASATVKKLFVAGLKLDM 510
PR ++P +++V L D+
Sbjct: 191 PRGSRPERQPRVYDAAFRIYVGNLPWDV 218
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
++ + + G++VD V+ D +T RS+GFGF+ S + V+ A
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 686
+ + L F G + V+ +++T + RGFGFV + ++ + N ++ + L
Sbjct: 125 DSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRL 184
Query: 687 DVKKA 701
V +A
Sbjct: 185 TVNRA 189
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
EE++ YF GN++ V+++ DK TG+++G FV++ DR ++QI
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
I+ ++EQ G +++V ++KD +T + +G F+ Y+ + D A
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 405
++E + Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 406 -RIVEPKRAVPRE 441
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
EE++ YF GN++ V+++ DK TG+++G FV++ DR ++QI
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
Score = 35.1 bits (77), Expect = 0.048
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
I+ ++EQ G +++V ++KD +T + +G F+ Y+ + D A
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 405
++E + Q+G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 406 -RIVEPKRAVPRE 441
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
+E+ + F+ FG + ++ D+ETG+ +GF FV F D D + + N Q D
Sbjct: 56 DEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 408
I+ + ++GE+ D ++ D +T RSKGF F+T+ + A ++DGR
Sbjct: 60 IERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGR 113
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFV 614
EE+L E+FSTFG I V +V DKET + RG ++
Sbjct: 274 EEELMEHFSTFGKISEVHLVLDKETKRSRGIAYI 307
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 513 EEDLGEYFSTF---GNIVSVSVVTDKETGK--KRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
+E L ++F+ G I+SV+++ K+ K G+GFVEFD + V + D
Sbjct: 582 DEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLD 641
Query: 678 QH 683
H
Sbjct: 642 GH 643
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+ E + +G+I +V ++ D +TKRS+G +I Y
Sbjct: 277 LMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
E DL E F FG + V V D++TG RGFGFV F + R + N
Sbjct: 226 EPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLN 275
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 426
+ E + +G + V V D KT S+GFGF+ + A N + D I+ +
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEW 288
Query: 427 AVPR 438
A PR
Sbjct: 289 ATPR 292
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+ L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 103 DSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFN 153
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
++ + + G++V+ V+ D + RSKGFGF+TY + V A ++ +DGR +
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
Query: 427 AVPR 438
A R
Sbjct: 280 AEAR 283
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 408
+ + +E G + V V+ D T RS+GFGF+T S V+ AQ +++DGR
Sbjct: 107 LAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR 160
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 638
L FS G +V V+ D+++G+ +GFGFV +D V
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
E++ L FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 492 EDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 408
+ +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
E++ L FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 492 EDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 408
+ +GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 426
++ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 324
Query: 427 AVPR 438
A R
Sbjct: 325 AEAR 328
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+ L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 111 DSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 408
+ + +E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 644
L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 426
++ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR +
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 427 AVPR 438
A R
Sbjct: 333 AEAR 336
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+ L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 111 DSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 408
+ + +E G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 644
L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E+L F +G I SVV DK+TG+ +GFGFV F
Sbjct: 177 ENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+K +E +GEI + V+ D T R+KGFGF+ + A N ++ R V A
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPA 238
Query: 430 VPREEIKRPEASATVKKL 483
P K E V+ +
Sbjct: 239 RPFNSGKPREQQQPVESV 256
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVS-VSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQH 683
+E+ L + FS FG I S ++ D +TG RGFGF+ +D ++ D Q + ++
Sbjct: 124 DEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
Query: 684 LDVKKAISK 710
+ V A K
Sbjct: 184 ITVSYAYKK 192
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 295 VMKDPKTKRSKGFGFITYSQAHMVDEA 375
+M+DP T S+GFGFI+Y D A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAA 170
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+E L FS G +VSV V+ +K TG+ G+GF+EF + +R N
Sbjct: 36 DENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYN 86
Score = 34.3 bits (75), Expect = 0.084
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 543 FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+ ++ VVTD TG+ +G+GFV+F + +R + N
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 354
F + + V+ DP T RSKG+GF+ +++
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 247 FIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
++ + Q GE+V V V+++ T + +G+GFI +
Sbjct: 39 YLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+E+L F ++G I SVV DK+TG+ +G+GFV F
Sbjct: 421 QENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 414
+K +E +GEI + V+ D T R KG+GF+ + EA ++ RIV
Sbjct: 424 LKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIV 478
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 477 KVVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 656
K+ S R E+ L + F FGN++ +++V DK + +GF F+ ++ + +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 657 QNHQIKD-QHLDVKKAISKTDMS 722
+ + D + + V++A +++DMS
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMS 160
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 426
+++ +EQ+G ++ + ++ D R KGF F+ Y ++ + Q +DGR++ +
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEE 152
Query: 427 AVPREEIKR 453
A R ++ R
Sbjct: 153 AKTRSDMSR 161
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 552 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
IVSV V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 522 LGEYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 435
F E++ + V+ D T RSKG+GF+ + + +A K R + A P
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 436 RE 441
R+
Sbjct: 277 RK 278
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 552 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
IVSV V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 522 LGEYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 435
F E++ + V+ D T RSKG+GF+ + + +A K R + A P
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 436 RE 441
R+
Sbjct: 277 RK 278
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+EDL + F+ FG IVSV + K G GFV+F
Sbjct: 317 DEDLKQPFNEFGEIVSVKIPVGK------GCGFVQF 346
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 689
E + E +FG + +V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431
Query: 690 VKKA 701
V++A
Sbjct: 432 VRRA 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 689
E + E +FG + +V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431
Query: 690 VKKA 701
V++A
Sbjct: 432 VRRA 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 689
E + E +FG + +V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431
Query: 690 VKKA 701
V++A
Sbjct: 432 VRRA 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KDQHL 686
+ + L E FS G IVS V TD G+ RG+GFV+FD D + N ++ D+ +
Sbjct: 146 DNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Query: 687 DVKKAISKTD 716
V + K +
Sbjct: 205 FVGPFLRKEE 214
Score = 34.3 bits (75), Expect = 0.084
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++E + ++G I VM+DP + SKG GF+ +S A N K+ G
Sbjct: 344 LRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 430 VPREEIKRPEASATVKKL 483
R+E +R + A ++
Sbjct: 403 AQRKEERRAKLQAQFSQM 420
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 665
+ L +YF+ +VSV V D T G+G+V + + D ++ + N+
Sbjct: 59 DSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNY 109
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 552 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
IVS+ V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 522 LGEYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 215 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 262
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+EDL + FS FG IVSV + K G GFV+F
Sbjct: 319 DEDLKQPFSEFGEIVSVKIPVGK------GCGFVQF 348
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 435
F E++ + V+ D T RSKG+GF+ + + +A K R + A P
Sbjct: 219 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 278
Query: 436 RE 441
R+
Sbjct: 279 RK 280
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 689
E + E +FG + ++V D+ETG +G+ F + D D C N ++ D+ L
Sbjct: 388 EVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLT 447
Query: 690 VKKAI 704
V++AI
Sbjct: 448 VRRAI 452
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
I+E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 391 IRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 504 RHE--EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 641
RH+ +EDL + F FG + + + D TG RGFGFV+F DP D
Sbjct: 44 RHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF--MDPAD 89
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 414
+++ +EQ+G + D+ + +D T +GFGF+ + +A+ H +DG ++
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK----HHMDGYLL 102
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQHLD 689
+E+L + F FG S ++ D E GK +GFGFV F++ D R N + D+
Sbjct: 237 DEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWF 295
Query: 690 VKKAISKTD 716
V KA K++
Sbjct: 296 VGKAQKKSE 304
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
+ + L E FS FG I+S V D +G+ +G+GFV++D
Sbjct: 145 DHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD 181
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 381
E + Q G++V V V +D T+RS G+G++ Y+ A N
Sbjct: 63 EAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
++ L E+F+ FG I S V+ D +G RG GFV F + R + N
Sbjct: 340 DDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMN 388
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/84 (25%), Positives = 41/84 (48%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+ + + ++G V+M+D + K SKGFGF+ + + D+A ++G+ + K
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENS---DDAA-RAVDALNGKTFDDKEW 294
Query: 430 VPREEIKRPEASATVKKLFVAGLK 501
+ K+ E +K+ F LK
Sbjct: 295 FVGKAQKKSERETELKQKFEQSLK 318
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 498 EARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+A + L E F+ G +VSV V D T + G+G+V +
Sbjct: 53 DATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNY 93
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
E+++L F FG ++S V DK TG + FGF+ +D
Sbjct: 351 EDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 381
++ +G+++ V D T SK FGFI+Y A N
Sbjct: 359 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
E+++L F FG ++S V DK TG + FGF+ +D
Sbjct: 342 EDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 381
++ +G+++ V D T SK FGFI+Y A N
Sbjct: 350 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 417
+ ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3
Query: 504 RHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
R +DL F+ +G +V V + D+ TG RGF FV + D + + + ++ D
Sbjct: 26 RTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 417
+ ++G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3
Query: 504 RHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
R +DL F+ +G +V V + D+ TG RGF FV + D + + + ++ D
Sbjct: 26 RTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 498 EARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
+A+ EE L FS FG ++ SV+ G+ RGF F+EF+ D R L + ++
Sbjct: 25 DAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIG 83
Query: 678 QHL 686
Q +
Sbjct: 84 QKI 86
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 417
+ + + + G +VDV ++ D T RS+GFGF+T EA Q +I GR V+
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVK 188
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 519 DLGEYFSTFGNIVSVSVVTDKETGKKRGFGFV 614
+L + F G +V V +V DK T + RGFGFV
Sbjct: 131 ELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+ L + F ++ V+ ++ TG+ RGFGF+ F+ + V N
Sbjct: 233 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
+K+ + ++ V+ + T RS+GFGFI++ A V A +++GR +
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294
Query: 427 AVPREE 444
A RE+
Sbjct: 295 ASEREK 300
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 504 RHE--EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
RH+ +EDL F FG + + + D TG RGFGF++F DP D + HQ+
Sbjct: 45 RHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF--MDPAD--AAEAKHQM 98
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 414
+EQ+G + D+ + +D T +GFGFI + EA+ H++DG ++
Sbjct: 57 FEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK----HQMDGYLL 103
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 647
+E L F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 74 DENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLDVKK 698
L + +++ ++ VV D+ TG+ +G+GFV F D R + N + + +
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGP 231
Query: 699 AISKTDMSG 725
A SK ++G
Sbjct: 232 AASKKGVTG 240
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 247 FIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 390
F+ + GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 77 FLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 188 EPEHTRKLFIGGLDYRTTDSSLKNSMS 268
+P +T +F+GGLD TD LKN S
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFS 282
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 647
+E L F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 74 DENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLDVKK 698
L + +++ ++ VV D+ TG+ +G+GFV F D R + N + + +
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGP 231
Query: 699 AISKTDMSG 725
A SK ++G
Sbjct: 232 AASKKGVTG 240
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 247 FIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 390
F+ + GE+V V+++ +T + +G+GFI +++ A V + NN P
Sbjct: 77 FLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 188 EPEHTRKLFIGGLDYRTTDSSLKNSMS 268
+P +T +F+GGLD TD LKN S
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFS 282
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 504 RHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 683
R E D+ E+FS G + V ++ D+ + + RG G+VEF D V + Q
Sbjct: 192 RATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQP 251
Query: 684 LDVKKAISKTDM 719
+ VK + ++ ++
Sbjct: 252 VMVKPSEAEKNL 263
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 674
E+DL + F +FG++ V V D ETG +GFGFV+F + R L N Q++
Sbjct: 298 EDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDA-RNALNLNGQLE 349
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN-NRPHKIDGRIVEPKR 426
+++ +E +G + V V +D +T KGFGF+ +++ A N N +I GR ++
Sbjct: 301 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSA 359
Query: 427 AVPREEIKRPEASAT 471
+ E+ PEA T
Sbjct: 360 VTDQTEV--PEAGQT 372
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+ EF+ + G++ DV ++ D ++RS+G G++ +
Sbjct: 198 VYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQHLD 689
E L F +G I ++ ++TG+ RGFGF+ F D D + ++ ++ +
Sbjct: 25 ERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVIS 84
Query: 690 VKKAISK 710
V KA K
Sbjct: 85 VNKAEPK 91
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
++ ++++G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 427 AVPR 438
A P+
Sbjct: 88 AEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQHLD 689
E L F +G I ++ ++TG+ RGFGF+ F D D + ++ ++ +
Sbjct: 25 ERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVIS 84
Query: 690 VKKAISK 710
V KA K
Sbjct: 85 VNKAEPK 91
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 426
++ ++++G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 427 AVPR 438
A P+
Sbjct: 88 AEPK 91
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 504 RHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KDQ 680
R E DL ++F+ G + V +V D T + RGFGF+ +R +H + + +
Sbjct: 85 RVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGR 144
Query: 681 HLDVKKA 701
+ V+KA
Sbjct: 145 VITVEKA 151
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 426
+++ + + G++ DV ++ DP T+ S+GFGFI+ + + H + GR++ ++
Sbjct: 91 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
Query: 427 A 429
A
Sbjct: 151 A 151
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
+EED+ ++F G + S+ ++ K+TGK RG + +F D
Sbjct: 663 QEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
+EED+ ++F G + S+ ++ K+TGK RG + +F D
Sbjct: 663 QEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 247 FIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRIV 414
F+K + +GEI +V ++KD KRSKG+ FI ++ A + E + R + +GR++
Sbjct: 55 FLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY--NGRMI 111
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/55 (30%), Positives = 35/55 (63%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 414
++ +E +GE+V+V ++ D +KRSKG+ F+ Y+ +EA +++G+I+
Sbjct: 298 LRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT----TEEAAGTALKEMNGKII 348
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
E+ L F FG +V V ++ DK + + +G+ F+E+ + + N +I
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI 347
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 164 SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLK 256
S DD E P T+KLFI GL + T++ +L+
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLR 299
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+K + ++GEI VVMKD + K S+ FGF+ + +A EA K++G +V+ K
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKA----EAAVTAIEKMNGVVVDEKEL 189
Query: 430 -VPREEIKRPEASATVKKLFVAGLKLDMKKK 519
V R + K K + + DMK +
Sbjct: 190 HVGRAQRKTNRTEDLKAKFELEKIIRDMKTR 220
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +3
Query: 498 EARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
+A + + L E FS+FG I+S V D TG+ +G+GFV+F+
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFE 184
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
++E L E FS +GN+ S V+ + + G RGFGFV + + + R + N
Sbjct: 344 DDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMN 393
Score = 35.5 bits (78), Expect = 0.036
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
+KE + ++G + VM +P+ S+GFGF+ YS A + K+ GR
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 430 VPREEIKRPEASATVKKLFVAG 495
R+E +R A ++ G
Sbjct: 407 AQRKEDRRAHLQALFSQIRAPG 428
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVP 435
E + +G I+ V D T RSKG+GF+ + + +E+ K++G ++ K+
Sbjct: 154 ETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAAIDKLNGMLMNDKQVFV 208
Query: 436 REEIKRPE 459
I+R E
Sbjct: 209 GHFIRRQE 216
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 537 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 668
+ +G++ VV D+ TG+ +G+GFV F D + R + N Q
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
+E + F+ G S V+ +K TG+ G+GF+EF + +RV N
Sbjct: 72 DENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYN 122
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 119 NILGLQV**ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKN 259
N L +Q N + + +GD+ +P +T +F+GGLD TD LK+
Sbjct: 235 NALPMQPAMYQNTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKS 278
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 351
F +G + V+ D T RSKG+GF+ ++
Sbjct: 174 FKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 504 RHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
R E L F+ FG + VVTD+ +G +GFGFV +
Sbjct: 66 RTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 426
++ + Q+GE+ D V+ D + SKGFGF+ Y+ + K +DG ++ +
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131
Query: 427 AVPREE 444
A PRE+
Sbjct: 132 ARPREQ 137
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 519 DLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH---LD 689
D+ ++F+ G +VS+ ++ + E GK G+GFVEF D + +N + H +D
Sbjct: 259 DIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENKNGEYLHDHKIFID 317
Query: 690 VKK 698
V K
Sbjct: 318 VAK 320
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 405
+++ +E++G + D+ + ++ T +GFGF+ Y A EA HK+ G
Sbjct: 63 LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 114
Score = 34.3 bits (75), Expect = 0.084
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 519 DLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
DL + F FG + + + + TG+ RGFGFV++ + + NH++
Sbjct: 62 DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
+++L F +FG ++S V DK TG + FGFV +D
Sbjct: 362 DQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYD 398
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 498 EARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIK 674
++R EED+ YFSTFG + V + +KR FGFV F + V + + N H +
Sbjct: 267 DSRFREEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVC 322
Query: 675 DQHLDVK 695
D + VK
Sbjct: 323 DSRVLVK 329
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E L F +G I +VV DK TGK +GFGFV F
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
+E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E L F +G I +VV DK TGK +GFGFV F
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
+E +GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 504 RHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
R E DL ++F+ G + V +V D T + RGFGF+ +R +H +
Sbjct: 55 RVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSV 110
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 414
+++ + + G++ DV ++ DP T+ S+GFGFI+ + + H + GR++
Sbjct: 61 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
L E+FS+ G I +VSV D++TG +G ++EF +
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E D+ +F G +V V T+++ G RGFG VEF
Sbjct: 309 ERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++ F+++ GE+VDV + +GFG + ++ + +A + GR + A
Sbjct: 313 VENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIA 372
Query: 430 VPREE 444
R E
Sbjct: 373 QERGE 377
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 354
++E + GEI +V V D T SKG ++ +S+
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E++ ++F T G + V+++TDK G+ +GF +VEF + + V ++ + L V
Sbjct: 106 EEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 519 DLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
DL E F FG + V D++T RGFGFV F + R + N
Sbjct: 189 DLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLN 236
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 426
+ E + +G + V D KT S+GFGF+++ A N + D I+ +
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249
Query: 427 AVPREEI 447
+ P+ ++
Sbjct: 250 STPKTQL 256
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYD 632
E+L E F FG + V + D +G+ RGF FVEF D YD
Sbjct: 61 EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYD 100
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 426
++E +E++G + DV + +D + + +GF F+ + A+ EAQ + + GR E
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGR--EITV 120
Query: 427 AVPREEIKRPE 459
V E KRPE
Sbjct: 121 VVASESRKRPE 131
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 36.7 bits (81), Expect = 0.016
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVE 617
+++L +FS G + V V TD+ETG RGF +++
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
++ + + GE+ V V D +T S+GF +I + DEA +I G + + +
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEES 556
Query: 430 VPRE 441
PR+
Sbjct: 557 RPRD 560
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 501 ARHEEED-LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
+ H ED L E S +G I ++ +V TG RG+GFVE++ + R +H + D
Sbjct: 72 SHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLID 131
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGR 408
++E ++G I ++ +++ T S+G+GF+ Y + A + H IDGR
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 522 LGEYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
L E FS + ++ S VV D TG+ +G+GFV F D + R + N
Sbjct: 218 LHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 34.3 bits (75), Expect = 0.084
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+E L FS G + SV V+ +K T + G+GFVEF
Sbjct: 120 DETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
+EDL + FS FG +VSV + K G GFV+F D
Sbjct: 334 DEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFAD 365
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 247 FIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 384
++ + GE+ V V+++ T +S+G+GF+ + +E N
Sbjct: 123 YLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--------NNRPHKIDGRIV 414
F +++ + V+ D T RSKG+GF+ + + A +NR ++ I
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG--IA 279
Query: 415 EPKRAVPREE 444
PKRA+ ++
Sbjct: 280 TPKRAIANQQ 289
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD-DYDPVDRVCLQQNHQIKDQHLDVKK 698
L F FG+I+S VV +E G+ +GFGFV+FD + V + + L V K
Sbjct: 128 LERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185
Query: 699 AISKTD 716
I+K +
Sbjct: 186 FINKDE 191
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
E L E F +G IVS V+ E G+ +GFGFV F +
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSN 353
Score = 32.7 bits (71), Expect = 0.26
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 426
++E + +G+IV VM + RSKGFGF+ +S +A+ +DG+ + +
Sbjct: 320 LREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378
Query: 427 AVPREE-IKR 453
A +E+ IKR
Sbjct: 379 AERKEDRIKR 388
Score = 32.3 bits (70), Expect = 0.34
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ-NHQIKDQHLD 689
++ L FS +G + SV V+ D G+ RGFGFV F + + + Q+ + L
Sbjct: 215 DDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLF 273
Query: 690 VKKAISKTD 716
V KA+ K +
Sbjct: 274 VGKALKKDE 282
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 441
+ Q+G + VVVM+D RS+GFGF+ + +A + + G + K+ +
Sbjct: 222 FSQYGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMES----LCGLQLGSKKLFVGK 276
Query: 442 EIKRPEASATVKKLF 486
+K+ E +K+ F
Sbjct: 277 ALKKDERREMLKQKF 291
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 665
E+DL + FS +VSV + + TGK + ++ FD + NH
Sbjct: 34 EKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNH 84
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/70 (24%), Positives = 40/70 (57%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
E++ ++F + G + V+++TDK G+ +GF +VEF + + V + ++ + +K
Sbjct: 117 EEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQNSLILNESELHGR--QIK 173
Query: 696 KAISKTDMSG 725
+ +T++ G
Sbjct: 174 VSAKRTNVPG 183
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
+K+ + GE+ +V ++K+P+TK+SKG F+ ++ A
Sbjct: 230 LKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 498 EARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
+A + + L E FS+FG I+S V D G+ +G+GFV+F+
Sbjct: 140 DASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFE 180
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 408
+KE + ++G + VM + + S+GFGF+ YS A K+ GR
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGR 395
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+K+ + ++G+I VVMKD ++ S+ FGF+ +
Sbjct: 241 LKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNF 272
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
E D+ E+FS G + V ++ D+ + + +G G++EF D
Sbjct: 181 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E L + F FG + V + D ETG+ +GFGF++F
Sbjct: 278 ELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--NNRPHKIDGRIVE 417
+++ +E +G + V + DP+T + KGFGFI + Q AQ N +I GR ++
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK 338
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 348
+ EF+ + G++ DV ++ D ++RSKG G+I +
Sbjct: 184 VYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
++ + + G++V V + P T +S GFGF+T+S V+ A
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 489 SWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFV 614
SWT E L F G++V VV D +TG+ RG+GFV
Sbjct: 185 SWTVT---SESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIV 414
+ + G++V V+ D T RS+G+GF+ Y S+A M ++ +++GR +
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 248
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
L + F N V V+ +++TG+ RGF FV + +
Sbjct: 101 LAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 277 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREEIKR 453
E+V+V+ +D T +S+GF F+T S + +N + GR ++ A + K
Sbjct: 112 ELVEVLYNRD--TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKE 169
Query: 454 PEASATVKKLFVAGL 498
P T KLFV L
Sbjct: 170 PLYPETEHKLFVGNL 184
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 35.1 bits (77), Expect = 0.048
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 537 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 668
+ + ++ VV D+ TG+ +G+GFV F D R + N Q
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 644
+E L F G + V+ +K+ G G+GF+EF ++ +R
Sbjct: 92 DENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 480 VVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 632
VV + EEDL + + +G + V V+ ++ +G RGF F++F D
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVD 350
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+EE L FS I + +V DK T RGF FV F
Sbjct: 470 DEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHF 506
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 160 LYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 286 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 381
D VM D KT RS+GFGF+++ A N
Sbjct: 172 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 295 VMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRI 411
V+++ + +R KGFGF+ Y+ +A + + N +P+ + +I
Sbjct: 292 VIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQI 333
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 164 LFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 286 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 381
D VM D KT RS+GFGF+++ A N
Sbjct: 176 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.048
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 480 VVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ 659
++ S +EED+ F FG I ++++ D+ +G +G+ +E++ +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 660 N-HQIKDQHLDVKKAISKTDMSGG 728
N ++ Q++ V A S + SGG
Sbjct: 157 NGAELLTQNVSVDWAFS-SGPSGG 179
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 411
E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 158 EAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
E L E F +G I V DK +GK +G+GF+ + R L+Q + +
Sbjct: 154 ETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA-RNALKQPQKKIGSRMTAC 212
Query: 696 KAISKTDMSGG 728
+ SK + GG
Sbjct: 213 QLASKGPVFGG 223
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 477 KVVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 656
K+ S A + + L +FS FG I + DK TG+ +GF + + R L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304
Query: 657 QNHQIKDQH-LDVKKAI 704
+ H+ + H L +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 432
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 411
E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 158 EAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
E L E F +G I V DK +GK +G+GF+ + R L+Q + +
Sbjct: 154 ETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA-RNALKQPQKKIGSRMTAC 212
Query: 696 KAISKTDMSGG 728
+ SK + GG
Sbjct: 213 QLASKGPVFGG 223
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 477 KVVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 656
K+ S A + + L +FS FG I + DK TG+ +GF + + R L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304
Query: 657 QNHQIKDQH-LDVKKAI 704
+ H+ + H L +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 432
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 411
E ++Q+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 158 EAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 695
E L E F +G I V DK +GK +G+GF+ + R L+Q + +
Sbjct: 154 ETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA-RNALKQPQKKIGSRMTAC 212
Query: 696 KAISKTDMSGG 728
+ SK + GG
Sbjct: 213 QLASKGPVFGG 223
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 477 KVVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 656
K+ S A + + L +FS FG I + DK TG+ +GF + + R L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304
Query: 657 QNHQIKDQH-LDVKKAI 704
+ H+ + H L +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 432
F+ ++GEI + + D T R KGF Y + A PHK +G I+ ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.7 bits (76), Expect = 0.064
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
++ L +F+ FG ++ +VTD TG+ G ++EF
Sbjct: 529 KDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 414
+ + + Q+G+++ V V+ D R KGF ++T+S ++A +DGR+V
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E L E F FG ++ V + D+ RG G+VEF
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 426
+KE + +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 427 AV-PREEIKRP 456
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E L E F FG ++ V + D+ RG G+VEF
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 426
+KE + +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 427 AV-PREEIKRP 456
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 34.3 bits (75), Expect = 0.084
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
++ L + F+ F V+ DK TGK +G+GFV F
Sbjct: 150 DDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 34.3 bits (75), Expect = 0.084
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 477 KVVCSWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 656
K+ S A + + L E+FS FG I + DK TG+ +GF + + + L+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK-ALE 286
Query: 657 QNHQIKDQHL 686
+ H+ + H+
Sbjct: 287 EPHKTFEGHV 296
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRA 429
EF+ ++GEI + + D T R KGF Y +A PHK +G ++ +A
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL-EEPHKTFEGHVLHCHKA 302
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 411
++Q+GEI D + D + +SKG+GFI + A KI R+
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRM 197
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +1
Query: 295 VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATV 474
++KD +T+R KGFGFIT+ D+AQ ++G+IV R + E K EA T
Sbjct: 97 LIKDQQTQRPKGFGFITFESE---DDAQ-KALKALNGKIVN-GRLIFVETAKEVEAPTTS 151
Query: 475 KK 480
K
Sbjct: 152 LK 153
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 686
++ L + F+ F ++ D++T + +GFGF+ F+ D + N +I + L
Sbjct: 84 DQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 498 EARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIK 674
++ ++ED+ YFS FG + V + +KR FGFV F + V V + N H I
Sbjct: 268 DSTFKDEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFIC 323
Query: 675 DQHLDVK 695
D + VK
Sbjct: 324 DSRVLVK 330
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 623
+++L F +FG ++S V DK TG + FG + FD
Sbjct: 361 DQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 519 DLGEYFSTFGNIVSVSVVTDKETGKKRGFGFV 614
D+ FSTFG + V+V+ D+ T + RG FV
Sbjct: 72 DIHTLFSTFGKVARVTVLKDRHTRQSRGVAFV 103
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 429
I + +G++ V V+KD T++S+G F+ Y D A+ R +D +I+ ++
Sbjct: 73 IHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE--DAAKAAR--SMDAKILNGRKL 128
Query: 430 VPREEIKRPEASATVKK 480
AS +KK
Sbjct: 129 TVSIAADNGRASEFIKK 145
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 662
L + + ++ VV D TG+ +G+GFV F D + R + N
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
+E L FS + SV V+ +K+T + G+GFVEF
Sbjct: 131 DETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEF 167
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
EEDL + FS FG +VSV + K G GFV+F
Sbjct: 340 EEDLMQPFSDFGEVVSVKIPVGK------GCGFVQF 369
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 253 KEFYEQWGEIVDVVVMKDP-KTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 423
+EF+ Q+G I +V+++K + +++ GFGFI Y+ +A + GRI+ K
Sbjct: 182 EEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
EED+ +YFSTFG + V + +KR FGFV F
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTF 200
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E + F ++G I V +VTD+ T K +G+ F+E+
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E++ +F T G + V+++ DK G+ +GF +VEF + + V ++ + L V
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 692
E++ +F T G + V+++ DK G+ +GF +VEF + + V ++ + L V
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ-AHMVDEAQNNRPHKIDGRIVEPKR 426
+KE +++ GE+ +V KR FGF+ Y++ + + ++ ++++G+ +E
Sbjct: 308 LKELFQRHGEVTKIVTPPGKGGKRD--FGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 427 AVPREEIKRPEAS 465
A P+ E K +S
Sbjct: 366 AKPQAERKHDPSS 378
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
+++ E+ GEI +V +MKD + SKG+ F+ + + +A
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 516 EDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKDQHLDV 692
E L E F G + + VT G KR FGFV + + + V + +++ Q L+V
Sbjct: 306 EQLKELFQRHGEVTKI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 259 FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
F + G + +V+V+ DP T+ KG F+T++ V +A
Sbjct: 464 FSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKA 502
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 534 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
FS + V+ D++TG+ RGFGFV F
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 286 DVVVMKDPKTKRSKGFGFITY 348
D VM D KT RS+GFGF+++
Sbjct: 167 DARVMWDQKTGRSRGFGFVSF 187
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 271 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREEI 447
+G+I DV D ++ + FGF+T+ + A +N ++ GR++ A+P E+I
Sbjct: 36 FGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALP-EKI 94
Query: 448 KRPE 459
K E
Sbjct: 95 KGGE 98
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E L F FG+I V D+ K R FGFV F
Sbjct: 26 ESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 414
++ + +G ++ V ++ D ++ R K +GF+T+S D+A + K I GR V
Sbjct: 23 VRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 671
E L + FS FG + +V ++ ++ T + G+G+V F+ + N ++
Sbjct: 71 EGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 677
E L + FS FG + +V ++ ++ T + G+G+V F+ + N + D
Sbjct: 90 EGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFD 144
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 546 GNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTD 716
G ++ + + DKET K +GF F E++ + D + + + +K AIS D
Sbjct: 31 GRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAISGQD 87
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 268 QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
Q G ++D+ + +D +T + KGF F Y + D A
Sbjct: 29 QAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 519 DLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKK 698
D+ +F G +V V ++ + + GK G+GFVEF + ++ ++ + + + +
Sbjct: 262 DIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVEFASANEAEKALVKNGEYLHNYKISLDG 320
Query: 699 A 701
A
Sbjct: 321 A 321
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 531 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 683
+F+ +VSV +V + E GK G+GFVEF ++ ++N + H
Sbjct: 177 FFNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEKNGEYLHNH 226
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 31.1 bits (67), Expect = 0.78
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 620
E D+ + F +GN+ + + DK TG++ + F+++
Sbjct: 123 EYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 247 FIKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 357
F+ E G + + +DP TK+ KGFGF + A
Sbjct: 218 FMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESA 254
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 317 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQNEQFQGKRLKDQ 457
++Q + L LKPI L + I G + E+ +EQF+GKRL ++
Sbjct: 4 KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 375
+K F GE+ +V +M++ + KG+ F+T+ + EA
Sbjct: 108 LKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 286 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 381
D VM D KT RS+GFGF+++ A N
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 211
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +3
Query: 522 LGEYFSTFGNIVS----VSVVTDKETGKKRGFGFVEF 620
L + FS F + S V+ D++TG+ RGFGFV F
Sbjct: 164 LFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 689
+ED+ YF FG + V + +KR FGFV F + V + + N H I D +
Sbjct: 332 DEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRVL 387
Query: 690 VK 695
VK
Sbjct: 388 VK 389
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 262 YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEAQN 381
+ Q+G I+DVV +K PK +G ++T+S+ H V + QN
Sbjct: 34 FSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAGHAVRQMQN 74
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 522 LGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 626
L +YFS+FG I V V TG G+ +++ +
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKE 288
>At1g48880.1 68414.m05476 hypothetical protein
Length = 485
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -2
Query: 531 TLPSLLLHV*LQSSYKQLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGL 352
T+P +L V S+++ +G WS N +CS W + I+L F+ +
Sbjct: 387 TIPVSILDVTSMSAFRS--DGHVGLWSDNPLVPDCSHWCLPGVPDIWNEILLFFLFRQPV 444
Query: 351 RICNKS 334
R C+ S
Sbjct: 445 RSCSSS 450
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 492 WTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 638
WT E +L +Y G + V +K +GK +G+ VEF YDPV
Sbjct: 244 WTTDAELEAELCKY----GAVKEVKFFDEKASGKSKGYCQVEF--YDPV 286
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/55 (27%), Positives = 33/55 (60%)
Frame = +3
Query: 543 FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAIS 707
FG I ++S++ ++G F FV+F+ D +R + +I +++++V+K +S
Sbjct: 768 FGPINAISII---KSGPLYKFAFVDFEKADVANRAIMASPVRICEKNVNVQKKLS 819
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 519 DLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD-DYDPVDRVCLQQNHQIKDQHLDVK 695
D+ FS G + V + + ETG +GF FV+F D + + H + + V
Sbjct: 346 DIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVD 405
Query: 696 KAISKTDMSG 725
A+ K +G
Sbjct: 406 WAVPKNIYNG 415
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 435
P+ K KGFG + + + +E++N +PH + GR+ + P
Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 495 TEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQI 671
+E+ +ED+ YF FG + V + ++ R +GFV F + V + + N H I
Sbjct: 274 SESSFTDEDVSTYFRDFGLVDDVRIPYQQQ----RMYGFVTFAKAETVRTILARGNPHFI 329
Query: 672 KDQHLDVK 695
D + VK
Sbjct: 330 CDSRVLVK 337
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 495 TEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQI 671
+E+ +ED+ YF FG + V + ++ R +GFV F + V + + N H I
Sbjct: 274 SESSFTDEDVSTYFRDFGLVDDVRIPYQQQ----RMYGFVTFAKAETVRTILARGNPHFI 329
Query: 672 KDQHLDVK 695
D + VK
Sbjct: 330 CDSRVLVK 337
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQHLD 689
E ++ + FS +G +V + + K + G+ FVEFDD D D + + + L
Sbjct: 20 EREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLR 76
Query: 690 VKKA 701
V+ A
Sbjct: 77 VELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQHLD 689
E ++ + FS +G +V + + K + G+ FVEFDD D D + + + L
Sbjct: 20 EREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLR 76
Query: 690 VKKA 701
V+ A
Sbjct: 77 VELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 EEDLGEYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQHLD 689
E ++ + FS +G +V + + K + G+ FVEFDD D D + + + L
Sbjct: 20 EREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLR 76
Query: 690 VKKA 701
V+ A
Sbjct: 77 VELA 80
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 510 EEEDLGEYFSTFGNIVSVSVV---TDKETGKKRGFGFVEF 620
+E L F FG I SV ++ TD+E ++R GFV F
Sbjct: 191 DENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At5g13655.1 68418.m01588 hypothetical protein
Length = 395
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 402
+ ++ ++W +I+ ++ KD T +S G++ + H + +++R H D
Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 351
++ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 88 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 121
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 250 IKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 351
++ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 87 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 522 LGEYFST-FGNIVSVSVVTDKETGKKRGFGFVEF 620
L E+F GN+VS V+ + + G+GFV F
Sbjct: 205 LKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSF 238
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 379 NNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKLDMKKK 519
+ +P +DGR+V K+A P +K P + + +GL ++++K
Sbjct: 409 DTKPPFLDGRVVYTKQAEPVMPVKDPTSDMAIISRKGSGLVKEIREK 455
>At4g38440.1 68417.m05432 expressed protein
Length = 1465
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 489 SWTEARHEEEDLGEYFSTFGNIVSVSVVTDKETGKK 596
+WTE DL FS GN+V VV+ ETG K
Sbjct: 308 AWTERVEAARDLR--FSFDGNVVEEDVVSPAETGGK 341
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 254 LMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 156
L+ + F+ R HR ++ Q LH + R PK S
Sbjct: 48 LLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,430,255
Number of Sequences: 28952
Number of extensions: 306515
Number of successful extensions: 1392
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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