Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0097
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   5.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   7.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   9.4  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    25   9.4  

>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 621 YPSYSMSRSLSNTGHEKFCMETTAQSSSSDS 529
           YPS SMS SLS+  H      ++  SSSS S
Sbjct: 510 YPSTSMSASLSSV-HTSSATSSSKSSSSSSS 539


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 116 SRPR*PRNSSLAYPEPSALTTTCSMKTPMPVMHP 217
           SRPR PR +S     P  L  T    +P+P  +P
Sbjct: 542 SRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNP 575


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 621 YPSYSMSRSLSNTGHEKFCMETTAQSSSSDSIMTMTFSVGRATRTQ 484
           YPS ++S + S+         +   SSS  S M++  S G +T  Q
Sbjct: 610 YPSSTLSMTTSHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTSLQ 655


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 306 IKINQTINITVSPSQPKYYFYPFKKGSGK 392
           + +NQ I++ V     + Y  PFK  SGK
Sbjct: 257 VSMNQPIDVVVQHRMDEDYVAPFKPFSGK 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,831
Number of Sequences: 5004
Number of extensions: 67332
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)