Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0097
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0626 - 26686411-26686518,26686876-26686953,26687763-266878...    31   1.0  
04_03_0690 + 18751601-18753667                                         31   1.0  
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340...    28   7.4  
08_02_0732 + 20521459-20522323,20522404-20522480,20523251-205232...    28   7.4  
08_01_0220 - 1751367-1752854                                           28   9.8  
04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053     28   9.8  
04_04_0592 + 26477974-26479311                                         28   9.8  

>04_04_0626 -
           26686411-26686518,26686876-26686953,26687763-26687810,
           26688012-26688167,26688725-26688795,26689949-26690055,
           26690145-26691112
          Length = 511

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 240 SDVVLSEQLKVTILVEKVQDFYIKINQTINITVSPSQPKYYFYPFKKGSGKTVDFDEQKM 419
           S V  S    V  + E++ DF  K   + ++ ++     Y  + F KGSG  V  DE+K+
Sbjct: 339 SQVPSSSTSSVDRIDEQLSDFETKKQISCSMQLTNRTDDYIAFKFNKGSGNVV--DERKL 396

Query: 420 RKEYI 434
           +  Y+
Sbjct: 397 KVVYV 401


>04_03_0690 + 18751601-18753667
          Length = 688

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 559 DDSAKLVVGFDHDYDVLGRESHPYPTSFLCTSPCPLPPLAPQ 434
           DD  +++ GFDH +  +  +  P P       P P PP  P+
Sbjct: 52  DDMIRILSGFDHRFSSITADLFPSPLPSSGAGPTPPPPPPPR 93


>11_01_0443 -
           3399226-3399242,3399551-3399731,3399847-3399936,
           3400377-3400459,3400540-3400667,3400747-3401002,
           3401094-3401199,3401300-3401366,3401467-3401580,
           3401811-3401889,3402189-3402359,3403135-3403267,
           3403874-3404033,3404119-3404261
          Length = 575

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -2

Query: 646 SSSRHS*IVPVVQYVAFVVEHGTREVLYGDDSAKLVVGFDHDYDVLGRESH 494
           S S H  +  VVQ +    E GT ++LY DD    V+    D D+ G   H
Sbjct: 454 SESLHELVSSVVQRLGIDGEKGTVQLLYDDDEGDRVL-LTTDTDLTGAVLH 503


>08_02_0732 +
           20521459-20522323,20522404-20522480,20523251-20523296,
           20523482-20523713,20524244-20524439
          Length = 471

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 535 GFDHDYDVLGRESHP--YPTSFLC-TSPCPLPPLAP 437
           G DH ++ L    H   +P+S LC TSP P PP  P
Sbjct: 139 GGDHRHNRLYNPYHSTAWPSSSLCSTSPAPAPPPPP 174


>08_01_0220 - 1751367-1752854
          Length = 495

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 180 VVVRAEGSGYASELFRGYRGLDQYWQLPREHPF 82
           V VRA G+ +     RGY+G+D ++ L    P+
Sbjct: 389 VAVRAGGAMFHGTTVRGYKGMDSFFFLMNPAPW 421


>04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053
          Length = 328

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 643 RRDHAHSRHVSDRLLHSVHSQNIGRGLQGAGD--QWVRARRGRLLGWGD 783
           R D + +RHV  R++ +V   + G G  GAG   +  R RRG   G GD
Sbjct: 89  RWDASPNRHVIHRIIDAVEEGSGGGGGGGAGPPRRPPRRRRGGKRGGGD 137


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 544 LVVGFDHDYDVLGRESHPYPTSFLCTSPCPLPPLAP 437
           L V  D         S P PT    T+P P PPL P
Sbjct: 70  LDVSMDKSLRAFHASSPPPPTPTTTTTPTPTPPLPP 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,885,171
Number of Sequences: 37544
Number of extensions: 558872
Number of successful extensions: 2009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)