Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0097
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2) 54 1e-07
SB_10658| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_42948| Best HMM Match : FtsX (HMM E-Value=0.26) 28 7.5
SB_28673| Best HMM Match : CP12 (HMM E-Value=8.2) 28 7.5
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3) 28 7.5
SB_7082| Best HMM Match : FGF (HMM E-Value=2.8e-22) 28 7.5
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22) 28 10.0
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25) 28 10.0
SB_42330| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_2437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2)
Length = 427
Score = 54.4 bits (125), Expect = 1e-07
Identities = 22/53 (41%), Positives = 35/53 (66%)
Frame = +2
Query: 500 LPTENVIVMIESDDELCAVVSIQNFSCPVFDNERDILYDGYYLTMTRRGGITL 658
+ T V + ES+ + CA++SIQ CPV+D R++ + GYY T+T +G IT+
Sbjct: 105 ISTSAVRIKFESNTQTCAILSIQGTQCPVYDLARNVEFTGYYQTVTTKGAITI 157
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +2
Query: 611 YDGYYLTMTRRGGITLTQDTFPIGFYIVFIVKTSDEDCK 727
+ GYY T+T +G IT+ Q T FY+V IVK++D +C+
Sbjct: 212 FTGYYQTVTTKGTITI-QKTQMKQFYVVVIVKSTDNECQ 249
>SB_10658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 222 EHAYSPSDVVLSEQLKVTILVEKVQDFYIKINQ 320
EHA + ++VV + +VT+L EK+++F K N+
Sbjct: 4 EHADTLANVVEKYENEVTVLQEKIKEFDFKTNE 36
>SB_42948| Best HMM Match : FtsX (HMM E-Value=0.26)
Length = 469
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 643 RRDHAHSRHVSDRLLHSVHSQNIGRGLQGAGD 738
RRD+ HSR ++LL + + G G++ GD
Sbjct: 96 RRDYIHSRMRGNKLLQMIETSRNGDGVKRDGD 127
>SB_28673| Best HMM Match : CP12 (HMM E-Value=8.2)
Length = 286
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -2
Query: 574 EVLYGDDSAKLVVGFDHDYDVLGRESHPYPTSFLCTSPC 458
E Y D K+ + L + PYP S LC PC
Sbjct: 134 EASYRWDMGKIFQALEKQLQDLKIKRQPYPWSLLCREPC 172
>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
Length = 487
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 58 LYVTARQQKGVFSWQLPILVQTPVTTEQFTSISRTLCP 171
L VT K VFS+ +P + ++PVT + CP
Sbjct: 443 LSVTLHLMKAVFSFDMPRITESPVTASRILQQLMHECP 480
>SB_7082| Best HMM Match : FGF (HMM E-Value=2.8e-22)
Length = 260
Score = 28.3 bits (60), Expect = 7.5
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Frame = +2
Query: 494 VALPTENVIVMIESDDELCAVVSI--QNFSCPVFDNERDILYDGYYLTMTRRGGI---TL 658
+A+ + I S+ + C + +NF + DI G+YL++ RG + T
Sbjct: 72 LAVDNQGKIFTSNSERKECVFRELTGKNFYTLIRTCHSDIHGHGWYLSINNRGRVATKTC 131
Query: 659 TQDTFPIGFYIVFIVKTSDE-DCKEPGTNGSVP 754
T P +IV ++K + E + K T S P
Sbjct: 132 TYSDHPQLHFIVKVIKENQENNGKSESTRNSTP 164
>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
Length = 581
Score = 27.9 bits (59), Expect = 10.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 50 PTRCTXQLDSRKGCSRGN 103
P+ C Q+ ++GCSRGN
Sbjct: 37 PSECKQQVQEQEGCSRGN 54
>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
Length = 312
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 149 LVNCSVVTGVWTSIGSCHENTPFCCRAVTYNG 54
LVNC V ++TS C E F C AV++ G
Sbjct: 9 LVNCFDVRNLYTS---CKEKASFFCTAVSHKG 37
>SB_42330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 213 CITGIGVFIEHVVVRAEGSGYASELFRGYRGLDQYWQLPREHPF 82
CI +G+ + V ++ + Y ++ + GL W+L +EHPF
Sbjct: 34 CIVTVGIVVVSVRLQRRDAYYRNDPSK--YGLALVWRLKQEHPF 75
>SB_2437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 595 VVEHGTREVLYGDDSAKLVVGFDHDYDVLGRESHPYPTSFL 473
V+ HGT V Y +S ++ F+ V G HP + F+
Sbjct: 11 VITHGTTVVFYETESMDVIKSFEMPTLVYGASLHPDKSCFV 51
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,743,187
Number of Sequences: 59808
Number of extensions: 561649
Number of successful extensions: 1768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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