Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0097
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 56 4e-08
AF026204-5|AAB71249.1| 239|Caenorhabditis elegans Hypothetical ... 41 0.001
U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical pr... 33 0.18
AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical ... 33 0.31
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 30 1.7
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 30 2.2
AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical... 29 2.9
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 3.8
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 29 3.8
Z92827-7|CAB07324.1| 368|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 28 6.7
U80840-4|AAB37931.1| 340|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +2
Query: 509 ENVIVMIESDDELCAVVSIQNFSCPVFDNERDILYDGYYLTMTRRGGITLTQDTFPIGFY 688
++V V ++S+ +C VS+Q CPVFD ++ G + TMT I + + FY
Sbjct: 165 DSVAVHLDSNSTICMTVSVQKIGCPVFDLPDNVNSMGLHQTMTTSATIPVEKSRMS-SFY 223
Query: 689 IVFIVKTSDEDCKE 730
+VF+V T+D+ C E
Sbjct: 224 VVFVVNTNDDLCSE 237
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 55 PLYVTARQQKGVFSWQLPILVQTPVTTEQFTSISRTLCPHNNMFDEDA 198
PL R++ + S Q+P++V +++ ++RTLCP + +A
Sbjct: 70 PLLAVFREKLAILSLQVPLIVDN----YEYSQVARTLCPFTEYKEGEA 113
>AF026204-5|AAB71249.1| 239|Caenorhabditis elegans Hypothetical
protein C30E1.4 protein.
Length = 239
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +2
Query: 509 ENVIVMIESDDELCAVVSIQNFSCPVFDNERDI-LYDGYYL-TMTRRGGITLTQDTFPIG 682
+ V + + S+ E+C + + CP+F+ + L D ++ T T+ G ++ ++
Sbjct: 157 DKVNIRVTSETEICGKIVTRQVKCPLFEASGLVELSDAHFFQTFTKFAGFSIRKNYIGRQ 216
Query: 683 FYIVFIVKTSDEDCKEPGTN 742
F+I FIV + C +P +N
Sbjct: 217 FHIAFIVNPDETLCGKPSSN 236
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 273 TILVEKVQDFYIKINQTINITVSPSQPKYYFYPF 374
++ VE V++F I N+ N + SPS P+YY Y F
Sbjct: 120 SLKVESVENFLIGSNK-FNSSASPSAPRYYMYTF 152
>U42844-4|ABM01868.1| 739|Caenorhabditis elegans Hypothetical
protein C08A9.3 protein.
Length = 739
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +2
Query: 509 ENVIVMIESDDELCAVVSIQNFSCPVFDNERDILYDG---YYLTMTRRGGITLTQDTFPI 679
+ V + + S E+C + + +CP+FD +L +Y + T G +L +
Sbjct: 171 DKVDIRVTSPSEICGKIVARRVNCPLFD-ASGLLEQSETFFYQSFTTFAGFSLKKSVIGR 229
Query: 680 GFYIVFIVKTSDEDCKEPGTNGSVP 754
F++ F V + C P +P
Sbjct: 230 QFHLAFTVHPDETLCGTPDNFFDIP 254
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 282 VEKVQDFYIKINQTINITVSPSQPKYYFYPF 374
V+ V +F I N+T SPS+P+YY Y F
Sbjct: 137 VKSVNNFIIG-NKTFKSKGSPSEPRYYMYTF 166
>AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical
protein Y37H2C.1 protein.
Length = 718
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 255 SEQLKVTILVEKVQDFYIKINQTINITVSPSQPKYYFYPFKKGSGK 392
S+ +I V+ V++F+I NQ + SP +P+YY Y F + K
Sbjct: 126 SDPTVFSIRVKPVKNFHIGSNQ-FEVHTSPPEPRYYLYTFPENVEK 170
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 509 ENVIVMIESDDELCAVVSIQNFSCPVFDNERDILY--DGYYLTMTRRGGITLTQDTFPIG 682
E V + SD +C + + CP+FD + D ++ + T+ G + +
Sbjct: 169 EKVNIRAFSDSSICGKLIARRVECPLFDRSGLVEQGEDYFFQSYTKFAGFPIKKSDIGSQ 228
Query: 683 FYIVFIVKTSDEDCK 727
F++ +V D C+
Sbjct: 229 FHLAVVVNPDDSICR 243
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 614 DGYYLTMTRRG-GITLTQDTFPIGFYIVFIVKTSDEDCKEPGTNGSVPAVA---VCWAG 778
DG L MT+ G + T+ +FPIG F+V T + NG+ PAV VC+ G
Sbjct: 424 DGKEL-MTKEGKAASATRMSFPIGEMQTFVVGTDTGEILAASRNGADPAVIKTDVCYKG 481
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 784 CPPSPADGHGGHGPIGP 734
CPP PA GG GP GP
Sbjct: 175 CPPGPAGPAGGPGPAGP 191
>AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical
protein Y54G2A.21 protein.
Length = 967
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 137 NSSLAYPEPSALTTTCSMKTPMPVMHP 217
+++L+ P P A+T TCS P+ HP
Sbjct: 872 SNALSRPNPMAITQTCSTSQPITRSHP 898
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 784 CPPSPADGHGGHGPIGP 734
CPP PA GG GP GP
Sbjct: 162 CPPGPAGPPGGPGPPGP 178
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 137 NSSLAYPEPSALTTTCSMKTPMPVMHP 217
+++L+ P P A+T TCS P+ HP
Sbjct: 406 SNALSRPNPVAITQTCSTSQPITRSHP 432
>Z92827-7|CAB07324.1| 368|Caenorhabditis elegans Hypothetical
protein C29F7.4 protein.
Length = 368
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 88 VFSWQLPILVQTPVTTEQFTSISRTLCPHNNMFDE 192
VF Q+P+ V TPV +QF +++ NN +E
Sbjct: 317 VFGRQVPMPVNTPVILQQFETVAEQEGIRNNPLEE 351
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 88 VFSWQLPILVQTPVTTEQFTSISRTLCPHNNMFDE 192
VF Q+P+ V TPV +QF +++ NN +E
Sbjct: 671 VFGRQVPMPVNTPVILQQFETVAEQEGIRNNPLEE 705
>U80840-4|AAB37931.1| 340|Caenorhabditis elegans Hypothetical
protein F08D12.9 protein.
Length = 340
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 730 LLAILVRCFDYEHYVEADRKRVLSERDPSSSRHS*IVPVVQYVAFVVEHGTREVLY 563
++A+ + D EH+ E +R+LSE + HS + F+ E G VLY
Sbjct: 178 IVALTLAFPDSEHFSELSTRRILSENQTNMIHHS--------MPFMAEMGVDRVLY 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,816,625
Number of Sequences: 27780
Number of extensions: 418117
Number of successful extensions: 1632
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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