Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0097
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ...    29   2.7  
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ...    29   2.7  
At5g08720.1 68418.m01036 expressed protein                             29   3.5  
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)...    29   3.5  
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)...    29   3.5  
At1g69820.1 68414.m08033 gamma-glutamyltranspeptidase family pro...    29   4.7  
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa...    28   6.2  
At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1 (...    28   8.2  

>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 908

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 372 FKKGSGKTVDFDEQKMRKEYICGASGGRGHG 464
           F  GSG+ V FD Q+MR   +     G G G
Sbjct: 85  FGTGSGQRVQFDNQRMRSNPMFSRDSGPGRG 115


>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 908

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 372 FKKGSGKTVDFDEQKMRKEYICGASGGRGHG 464
           F  GSG+ V FD Q+MR   +     G G G
Sbjct: 85  FGTGSGQRVQFDNQRMRSNPMFSRDSGPGRG 115


>At5g08720.1 68418.m01036 expressed protein
          Length = 719

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 409 SRKCVRSTSVARVVGGGMARCRGTR-LGTGGSPD 507
           SR  V S+     +GGG+A+C GTR  G GG  D
Sbjct: 33  SRIRVFSSISTSGIGGGVAKCHGTRHSGAGGRGD 66


>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
           contains Pfam profile: PF00249 myb DNA-binding domain
          Length = 520

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 86  GCSRGNCQYWSRPR*PRNSSLAYPEPSALTTTCSMKTPMPVMHP 217
           GCS    Q +S P   RN+S     P  ++ TCS   P  V HP
Sbjct: 241 GCSSTIKQEFSSPEQFRNTS-----PQTISKTCSFSVPCDVEHP 279


>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
           contains Pfam profile: PF00249 myb DNA-binding domain
          Length = 451

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 86  GCSRGNCQYWSRPR*PRNSSLAYPEPSALTTTCSMKTPMPVMHP 217
           GCS    Q +S P   RN+S     P  ++ TCS   P  V HP
Sbjct: 241 GCSSTIKQEFSSPEQFRNTS-----PQTISKTCSFSVPCDVEHP 279


>At1g69820.1 68414.m08033 gamma-glutamyltranspeptidase family
           protein similar to SP|P19440
           Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2)
           (Gamma-glutamyltransferase 1) (CD224 antigen) {Homo
           sapiens}; contains Pfam profilePF01019:
           Gamma-glutamyltranspeptidase
          Length = 191

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 276 ILVEKVQDFYIKINQTINITVSPSQPKYYFYPFKKG-SGKTVDFDEQKMRKEYICGASGG 452
           +L  ++ DF I +  + N+TV P  P  +  P K+  S  T     +  + +   GASGG
Sbjct: 89  VLNNEMDDFSIPMKSSSNLTVPPPAPANFIRPGKRPLSSMTPTIVLKDGKVKASVGASGG 148


>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 441

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 523 DYDVLGRESHPYPTSFLCTSPCPLPPLAPQMYS 425
           + +V GR+   + TS L  SPCP PP   QM+S
Sbjct: 274 EVEVPGRKPLVFATSHL-ESPCPGPPKWDQMFS 305


>At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1
           (PLDGAMMA1) identical to phospholipase D gamma 1
           SP:Q9T053 from [Arabidopsis thaliana]
          Length = 858

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 432 ICGASGGRGHGEVQRNEVG 488
           +C  SGG+GH  ++++EVG
Sbjct: 345 LCPRSGGKGHSFIKKSEVG 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,441
Number of Sequences: 28952
Number of extensions: 394098
Number of successful extensions: 1176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)