Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0096
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 64 1e-10
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 64 1e-10
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 47 1e-05
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 47 1e-05
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 47 2e-05
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 33 0.18
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 29 3.0
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 29 4.0
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Frame = +2
Query: 29 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 202
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 203 -GGTGECRYGLFDFEYT 250
ECRY D E T
Sbjct: 61 VEDGKECRYAAVDVEVT 77
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 259 QGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQ 432
QG S K+ + +CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +
Sbjct: 81 QGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDE 139
Query: 433 EAVEEKLRATDR 468
++V+ L + R
Sbjct: 140 KSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Frame = +2
Query: 29 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 202
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 203 -GGTGECRYGLFDFEYT 250
ECRY D E T
Sbjct: 61 VEDGKECRYAAVDVEVT 77
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 259 QGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQ 432
QG S K+ + +CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +
Sbjct: 81 QGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDE 139
Query: 433 EAVEEKLRATDR 468
++V+ L + R
Sbjct: 140 KSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 277 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 453
SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 99 SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
Frame = +2
Query: 29 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 166
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 167 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 250
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 277 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 453
SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 99 SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
Frame = +2
Query: 29 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 166
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 167 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 250
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = +1
Query: 268 SEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAV 441
SE S K+ L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V
Sbjct: 147 SEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSV 202
Query: 442 EEKLRATDR 468
+ L + R
Sbjct: 203 KSDLMSNQR 211
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 435
SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE S +
Sbjct: 99 SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
Frame = +2
Query: 29 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 166
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 167 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 250
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 187 RGSAEGRYRGMQIWP--V*L*IHAPCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 348
R G+Y G + +P + + IH+ C G+ E + +F S PD+ K KKK+LY
Sbjct: 141 RPKVNGKYEGAEEYPDELAVFIHSLC-GSHEIHPVKIIFRFSKYPDSLKYKKKILY 195
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 243 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 142
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 243 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 142
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 256 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 435
C+ S+ + L+ +CP+ + + +MLY+ S + + V K + D+ E E
Sbjct: 74 CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132
Query: 436 AVEEK 450
+E K
Sbjct: 133 LLESK 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,771
Number of Sequences: 27780
Number of extensions: 388641
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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