Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0096
(816 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 66 3e-11
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 66 3e-11
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 64 1e-10
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 64 1e-10
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 64 1e-10
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 62 3e-10
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 62 6e-10
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 61 7e-10
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 60 2e-09
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 59 3e-09
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 59 3e-09
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 57 1e-08
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 54 1e-07
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 51 8e-07
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.69
At2g38440.1 68415.m04721 expressed protein 30 2.1
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 30 2.1
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t... 29 2.8
At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containi... 29 2.8
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 4.9
At5g63320.1 68418.m07946 expressed protein 28 8.5
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 8.5
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 28 8.5
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 66.1 bits (154), Expect = 3e-11
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QATD +E + ++
Sbjct: 69 TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLK 128
Query: 445 EKL 453
++
Sbjct: 129 SRV 131
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 41 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 217
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 218 CRYGLFDFEY 247
CRY ++DF++
Sbjct: 58 CRYAIYDFDF 67
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 66.1 bits (154), Expect = 3e-11
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QATD +E + ++
Sbjct: 76 TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLK 135
Query: 445 EKL 453
++
Sbjct: 136 SRV 138
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 208
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 209 TGECRYGLFDFEY 247
ECRY ++DF++
Sbjct: 62 ADECRYAIYDFDF 74
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T + +K K+F ++W PDT++V+ KMLY+SS D K+ + G+Q +QATD SE S + ++
Sbjct: 76 TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIK 135
Query: 445 EKL 453
+L
Sbjct: 136 GRL 138
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 205
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIP-- 61
Query: 206 GTGECRYGLFDFEYT 250
ECRY ++DF++T
Sbjct: 62 -DDECRYAVYDFDFT 75
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 423
T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QATD +E
Sbjct: 76 TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE 128
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 208
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 209 TGECRYGLFDFEY 247
ECRY ++DF++
Sbjct: 62 ADECRYAIYDFDF 74
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T E +K K+F ++W PDT++V+ KMLY+SS D K+ L G+Q +QATD SE S + ++
Sbjct: 76 TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 135
Query: 445 EKL 453
++
Sbjct: 136 GRV 138
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 205
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPE- 62
Query: 206 GTGECRYGLFDFEYT 250
ECRY ++D+++T
Sbjct: 63 --DECRYAVYDYDFT 75
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T+E +K K+F ++W PDTAKV+ KM+Y+SS D K+ L G+Q +QATD +E + +
Sbjct: 74 TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFK 133
Query: 445 EK 450
+
Sbjct: 134 SR 135
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 211
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60
Query: 212 GECRYGLFDFEY 247
+CRY ++DF++
Sbjct: 61 DDCRYCIYDFDF 72
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/62 (41%), Positives = 44/62 (70%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T+E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q +QATD SE S + ++
Sbjct: 74 TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 133
Query: 445 EK 450
+
Sbjct: 134 SR 135
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 211
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLP---P 60
Query: 212 GECRYGLFDFEYT 250
ECRY ++DF++T
Sbjct: 61 NECRYAVYDFDFT 73
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/62 (41%), Positives = 43/62 (69%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q +QATD SE S + ++
Sbjct: 67 TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIK 126
Query: 445 EK 450
+
Sbjct: 127 SR 128
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +2
Query: 41 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 220
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 221 RYGLFDFEY 247
RY +FDF++
Sbjct: 57 RYAVFDFDF 65
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +2
Query: 35 SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQKGGT 211
SG+ V+D KTT+ E+++ K HRYVVF I +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLP---D 69
Query: 212 GECRYGLFDFEY 247
+CRY ++DF++
Sbjct: 70 NDCRYAVYDFDF 81
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
TSE +K K+F +W P T+ ++ K+LYS+S D L + L G+ IQATD +E E +
Sbjct: 83 TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLR 142
Query: 445 EK 450
E+
Sbjct: 143 ER 144
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 208
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 209 TGECRYGLFDFEY 247
ECRY +FDF++
Sbjct: 62 ADECRYAIFDFDF 74
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 208
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 209 TGECRYGLFDFEY 247
ECRY +FDF++
Sbjct: 62 ADECRYAIFDFDF 74
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
+SE + ++F ++W PDTA+V+ KM+Y+SS D K+ L G+Q +QATD +E + +
Sbjct: 76 SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFK 135
Query: 445 EK 450
+
Sbjct: 136 SR 137
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +1
Query: 283 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 453
++K+ ++W P TAK++KKM+YSS+ D K+ L G+Q ATDL++ S +A+ ++
Sbjct: 76 ERKICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +2
Query: 41 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVE------TVGERNAEYEQFLEDLQK 202
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 203 GGTGECRYGLFDFEY 247
ECRY + D E+
Sbjct: 60 --ADECRYAILDIEF 72
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 54.0 bits (124), Expect = 1e-07
Identities = 20/64 (31%), Positives = 43/64 (67%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T + +K K+F ++W P+ +K++ K+LY++S D L++ L G+ +QATD +E + ++
Sbjct: 80 TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQ 139
Query: 445 EKLR 456
++ +
Sbjct: 140 DRAK 143
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +2
Query: 26 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 199
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 200 KGGTGECRYGLFDFEY 247
+CRY +FDF++
Sbjct: 66 ---VDDCRYAVFDFDF 78
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 47 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECR 223
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +CR
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPE---DDCR 57
Query: 224 YGLFDFEY 247
Y +FDF+Y
Sbjct: 58 YAVFDFDY 65
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/64 (28%), Positives = 42/64 (65%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T + + K+F ++W P+ +++++KM+Y++S L++ L GV +QATD +E + ++
Sbjct: 67 TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQ 126
Query: 445 EKLR 456
++ +
Sbjct: 127 DRAK 130
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.69
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 146 ETVGERNAEYEQFLEDLQKGGTGE 217
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At2g38440.1 68415.m04721 expressed protein
Length = 1399
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 790 PTRC*VVTGTIDIYNINVPPI*LQRLPRPSNR--NALLLHGRNRQGAVVPTRADSQEVLP 617
P C V T+D Y V P RLPRP + +A+ H R + V S+ V P
Sbjct: 1276 PVSCFSVAPTLDTYKTEVVP--TVRLPRPRSPLVDAVAAHDRRKMKKV------SEMVHP 1327
Query: 616 PVKS 605
P+KS
Sbjct: 1328 PIKS 1331
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 29.9 bits (64), Expect = 2.1
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +3
Query: 354 LVRRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETDPLSDTPAL 533
++R+S + +S E+ D +G S + R P H + S + RDE+D D
Sbjct: 143 MIRKSGFIKKKSKEL---DLSIGRKSTAKARNFPSHHLHVASGLSVVRDESDETEDFSNS 199
Query: 534 TTRGHDTTSRLVL-LQRKTNSINMIDFTGGRTSCE-SARVGTTAPCL 668
+S L+L L+RK S + F G + E S+ + P L
Sbjct: 200 ENFPTKVSSPLLLKLKRKNWSRSSSKFLRGTSKREDSSHTCNSTPAL 246
>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 917
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Frame = +3
Query: 285 TEALPDVVVPGHRQG*E---EDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRRREAP 455
TEA VVP G E ED + + +R+ ++ P + + + + G + +P
Sbjct: 3 TEAFVKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSP 62
Query: 456 RHRSPINSIYTRARDETDPLSDTPALTTRGHDTTSRLVLLQRKTNSI 596
RSP+ S A T PAL + S L R S+
Sbjct: 63 PMRSPLTSPNRSASSSTRSSMMKPALPSSSSVQRSTLKSPLRDDRSV 109
>At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 689
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 539 CRQGRSVGERVGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWM 399
C+ G R F S NA+ W ++ +++ D + RS+ WM
Sbjct: 363 CKCGDMASGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWM 409
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 665 AGGGGTYPRGLTRGPTTSKINHINTIRFP 579
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 315 GHRQG*EEDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRR--REAPRHRSPINSIYT 488
G ++ E +VV + +E V EVHP DR G R RE PR S+
Sbjct: 311 GDKEEQETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSE 370
Query: 489 RARD 500
+A+D
Sbjct: 371 KAQD 374
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -3
Query: 757 DIYNIN-VPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFVF 581
DI I P I + L S++ L+ R + D + L P K ++ +LF F
Sbjct: 165 DIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEK-LLELLFRF 223
Query: 580 LCNNTKRLVVSWPRVVRAG 524
C LV SWP R G
Sbjct: 224 TCFIGDALVESWPEADRKG 242
>At1g24150.1 68414.m03047 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 725
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 474 NSIYTRARDETDPLSDTPALTTRGHDTTSRLVL 572
N IY++++ ++ P+++TP L RG +TS V+
Sbjct: 183 NVIYSKSKKKSGPVTETPLL--RGRSSTSHSVI 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,681,868
Number of Sequences: 28952
Number of extensions: 365515
Number of successful extensions: 1170
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -