Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0095
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   3.9  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   5.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   8.9  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   8.9  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 199 SLTDDYELCLTKCRTSSYR 255
           +L D Y LC TKC  S YR
Sbjct: 369 NLKDKYALCSTKCCKSEYR 387


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 670 QILICWCFQSLQSIK 714
           QILICWC+  L   K
Sbjct: 591 QILICWCYYRLNDFK 605


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 591 FYLFIRYIFNFLKFHGTHKNLHPFKISNLNLLVLSITTEHKT 716
           +YL  R     L F  T K+++   ISN  +LV S  T+++T
Sbjct: 471 YYLDTRMYKVCLNFTTTQKDINHATISNSGILVTSSGTDNQT 512


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 103 EHCVSCCLDPGKRDMLEIVLSKLSTEKSILFRSLTDDY 216
           E C+S   D  +R +L  ++S+ +   SIL   + D Y
Sbjct: 631 ERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKY 668


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 3   KRCNEKWLLRP 35
           KRCNEKW + P
Sbjct: 677 KRCNEKWTIAP 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,141
Number of Sequences: 5004
Number of extensions: 66082
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)