Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0095
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro...    36   0.039
At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro...    36   0.039
At5g44940.1 68418.m05512 F-box family protein contains F-box dom...    34   0.12 
At2g32340.1 68415.m03953 TraB family protein contains Pfam domai...    31   1.1  
At1g51790.1 68414.m05836 leucine-rich repeat protein kinase, put...    29   3.4  
At3g58420.1 68416.m06511 meprin and TRAF homology domain-contain...    28   7.8  

>At3g59390.2 68416.m06624 expressed protein protein CG15643 -
           Drosophila melanogaster, EMBL:AE003499
          Length = 273

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 100 YEHCVSCCLDPGKRDMLEIVLSKLSTEKSILFRSLTDDYELCLTKCRTSS 249
           YE CVSCCL+P  + +LE V+ K+   K     +    ++ C  +CR +S
Sbjct: 92  YEFCVSCCLNP-SQTLLEKVV-KVKVAKPATSGTYKSVFDFCAGRCRHNS 139


>At3g59390.1 68416.m06623 expressed protein protein CG15643 -
           Drosophila melanogaster, EMBL:AE003499
          Length = 273

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 100 YEHCVSCCLDPGKRDMLEIVLSKLSTEKSILFRSLTDDYELCLTKCRTSS 249
           YE CVSCCL+P  + +LE V+ K+   K     +    ++ C  +CR +S
Sbjct: 92  YEFCVSCCLNP-SQTLLEKVV-KVKVAKPATSGTYKSVFDFCAGRCRHNS 139


>At5g44940.1 68418.m05512 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 217 HSHLLMSGRECSSLLKVLIRLSPACPSCLDLSNMIHNVHIQRSNCFYYKIHSCTV 53
           H+   +  R  SS L++L     +CP+C +L N+I     +  N  ++K+  C +
Sbjct: 253 HNLYHLQARFSSSSLQLLPTFLESCPACPNLKNLIMEFPFEPKNIDFHKVPQCLI 307


>At2g32340.1 68415.m03953 TraB family protein contains Pfam domain
           PF01963: TraB family
          Length = 272

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/83 (30%), Positives = 45/83 (54%)
 Frame = +1

Query: 127 DPGKRDMLEIVLSKLSTEKSILFRSLTDDYELCLTKCRTSSYRYCMRILTKIQHISIVSV 306
           D G  DML + + ++STE   L  +L  + +      +  +Y+  +RI +  +H S+V+V
Sbjct: 164 DLGDGDMLTLAIQEMSTEFPTLMETLVHERD------KYMAYQ-LLRIAS--EHSSVVAV 214

Query: 307 MSHLGHIQVTKCNF**INDTVNL 375
           +   GH+Q  K N+   N T+N+
Sbjct: 215 VGR-GHLQGIKKNW---NQTINI 233


>At1g51790.1 68414.m05836 leucine-rich repeat protein kinase,
           putative smilar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 881

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 124 LDPGKRDMLEIVLSKLSTEKSILFRSLTDDYELCL 228
           L P K D +E+V    +  K I++  LTD  ++CL
Sbjct: 126 LGPNKWDTVELVSPLQTVSKEIIYYVLTDTIQVCL 160


>At3g58420.1 68416.m06511 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 294

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 609 YIFNFLKFHGTHKNLHPFKISNLNLLVLSITTEH 710
           + F+FL+    H+ L PF I +  L+ LS  TEH
Sbjct: 87  FFFSFLEMARPHRPLSPFFIHSNILVSLSGKTEH 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,475
Number of Sequences: 28952
Number of extensions: 312190
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)