Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0093
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    28   1.9  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    27   2.6  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/86 (25%), Positives = 38/86 (44%)
 Frame = -2

Query: 357 DSSAKNRHASESERKPQDETRLPCTHWPSACLAVFEEHAQPALKLLVIIRDDDISTEFAY 178
           DS+   RH S++   P D    P   W      V +   +  L+ L++   +D+  +   
Sbjct: 272 DSAMFGRHNSKNWALPADLHFEPSPIWHDTDALVVDGSCKNYLRNLLVHSKNDLGKQKGE 331

Query: 177 LVALAAQLWMLETRDKIIYSQTSKIK 100
           LV+L +QL  L   D    +Q+ + K
Sbjct: 332 LVSLDSQLEGLRVDDPNSANQSFESK 357


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 565 NLLMVYSYLFDARFALLNSQKLNTMEKHCELINIQQYKRDILNYFCRLQS 714
           NL + Y   F+AR    N+QK    EK  ++ N  Q++ D+      LQS
Sbjct: 232 NLKLDYQSFFNAR---ANAQKREAAEKAEQMNNANQFREDVCALELDLQS 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,702
Number of Sequences: 5004
Number of extensions: 66337
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)