Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0093
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 33 0.22
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 33 0.22
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 31 0.89
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 30 2.0
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 30 2.7
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 30 2.7
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 29 6.2
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36... 28 8.3
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = -2
Query: 546 ARLVVSCASRRVELDTRPHHVNTLVSIELRKPVAMDLEETYVVDRQPKRTSVYTRAL*TP 367
A V+ C +V LD P+ VN + R+ + +++ +++ ++P++ +RA
Sbjct: 11 ASSVLKCGKGKVWLD--PNEVNEISMANSRQNIRKLVKDGFII-KKPQKIHSRSRAR--- 64
Query: 366 RPFDSSAKNRHASESERKPQDETRLP 289
R ++ K RH+ +R+ E RLP
Sbjct: 65 RAHEAKQKGRHSGYGKRRGTREARLP 90
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = -2
Query: 546 ARLVVSCASRRVELDTRPHHVNTLVSIELRKPVAMDLEETYVVDRQPKRTSVYTRAL*TP 367
A V+ C +V LD P+ VN + R+ + +++ +++ ++P++ +RA
Sbjct: 11 AASVLKCGKGKVWLD--PNEVNEISMANSRQNIRKLVKDGFII-KKPQKIHSRSRAR--- 64
Query: 366 RPFDSSAKNRHASESERKPQDETRLP 289
R ++ K RH+ +R+ E RLP
Sbjct: 65 RAHEAKQKGRHSGYGKRRGTREARLP 90
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 31.5 bits (68), Expect = 0.89
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 198 YHHLL*SPATLKPAVHALRTLRDRPRAS-VYMATSSRLVAFVRSRKRV 338
YHHLL SP PA +L T R RPRA V A S A R+ V
Sbjct: 3 YHHLLLSPPHPHPARLSLVTSRRRPRAGRVAAACSPSPSALAAGRRAV 50
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 257 TARQAEGQCVHGNLVSSCGFRSLSEACRFFALE 355
TA +AE + V GNL G+R +++AC+ FA +
Sbjct: 175 TAAEAE-RAVAGNLCRCTGYRPIADACKSFAAD 206
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 248 SSNTARQAEGQCVHGNLVSSCGFRSLSEACRFFALE 355
S TA +AE + V GNL G+R + +AC+ FA +
Sbjct: 150 SKLTAAEAE-KAVSGNLCRCTGYRPIVDACKSFAAD 184
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 248 SSNTARQAEGQCVHGNLVSSCGFRSLSEACRFFALE 355
S TA +AE + V GNL G+R + +AC+ FA +
Sbjct: 151 SKITAAEAE-KAVSGNLCRCTGYRPIVDACKSFAAD 185
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 257 TARQAEGQCVHGNLVSSCGFRSLSEACRFFALE 355
TA AE + V GNL G+R + +AC+ FA +
Sbjct: 152 TAADAE-RAVSGNLCRCTGYRPILDACKSFAAD 183
>08_01_0052 +
361505-361969,362270-362348,362816-362880,363069-363236,
363731-364171
Length = 405
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 385 RVHTRSFWLSVNYVSFF*VHRNGLPKFNRYECV 483
R H +S W NY H+NGLP ++ EC+
Sbjct: 360 REHCKSGWHKHNYTR----HKNGLPPLSQEECL 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,369,102
Number of Sequences: 37544
Number of extensions: 399062
Number of successful extensions: 998
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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