Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0093
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              29   4.8  
SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_13148| Best HMM Match : Laminin_G_2 (HMM E-Value=6.4e-27)           28   8.4  

>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 439 PRRNLRS*QTTKTNECVHARSLDSQTL*LERKKP-TRFRERTKATRRDEVAMYTL 278
           P + +R+ QTT+  +CV  R   +QT+   +  P T    RT +T+  + A Y L
Sbjct: 705 PTQTVRTVQTTQHRQCVPYRLYPTQTVRTVQTLPNTDSAHRTDSTQHRQCAPYRL 759


>SB_52309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 152 HNCAANATKYANSVXXXXXXXXTSNFKAGCACSSNTARQAEGQCVHGNLVSSCG 313
           H C+ +AT Y N++              G  C SN A+   G    GNLVS  G
Sbjct: 229 HKCSLHATCY-NTLGSFRCSCKVGFHGDGKTCHSNVAKLDHGVWYRGNLVSFQG 281


>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/86 (22%), Positives = 45/86 (52%)
 Frame = -2

Query: 546 ARLVVSCASRRVELDTRPHHVNTLVSIELRKPVAMDLEETYVVDRQPKRTSVYTRAL*TP 367
           A  ++ C  +++ LD  P+  N + +   R+ V   +++  ++ ++P+   V++RA    
Sbjct: 39  AASLLKCGKKKIWLD--PNECNEIANANSRQNVRKLIKDGLII-KKPE--IVHSRAR-VR 92

Query: 366 RPFDSSAKNRHASESERKPQDETRLP 289
           +  ++ +K RH+   +RK     R+P
Sbjct: 93  KADEARSKGRHSGHGKRKGTANARMP 118


>SB_13148| Best HMM Match : Laminin_G_2 (HMM E-Value=6.4e-27)
          Length = 262

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 398 RVCTRALSRLPDPLTRAQKTDTLPRANESHKTRRGCHVH 282
           ++C   ++++P P+    +T  L   +   KT +G H+H
Sbjct: 36  KMCGGGVNKIPRPMRLTGRTVNLAFKSNQRKTEKGFHMH 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,719,673
Number of Sequences: 59808
Number of extensions: 502802
Number of successful extensions: 1304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)