Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0093
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24130.1 68414.m03044 transducin family protein / WD-40 repea...    31   0.74 
At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to ...    30   1.7  
At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to ...    30   1.7  
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...    29   3.9  
At5g22590.1 68418.m02638 hypothetical protein                          28   9.1  
At4g39430.1 68417.m05580 expressed protein  ; expression support...    28   9.1  

>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats
           (PF00400);similar to beta transducin-like protein
           HET-D2Y (GI:17225210) [Podospora anserina].
          Length = 415

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 270 ACLAVFEEHAQPALKLLVIIRDDDISTEFAYLV 172
           +CLAV E H +P   L V + D D +++++ +V
Sbjct: 364 SCLAVLEGHTKPVKSLAVSVSDSDSNSDYSCMV 396


>At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to
           aldehyde oxidase AAO1 from Arabidopsis thaliana
           [gi:3172023] isoform contains a GA-donor splice site at
           intron 10
          Length = 1368

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 248 SSNTARQAEGQCVHGNLVSSCGFRSLSEACRFFALE 355
           S+ TA +AE + V GNL    G+R L +AC+ FA +
Sbjct: 160 SNLTAVEAE-KAVSGNLCRCTGYRPLVDACKSFAAD 194


>At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to
           aldehyde oxidase AAO1 from Arabidopsis thaliana
           [gi:3172023] isoform contains a GA-donor splice site at
           intron 10
          Length = 1368

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 248 SSNTARQAEGQCVHGNLVSSCGFRSLSEACRFFALE 355
           S+ TA +AE + V GNL    G+R L +AC+ FA +
Sbjct: 160 SNLTAVEAE-KAVSGNLCRCTGYRPLVDACKSFAAD 194


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = -2

Query: 546 ARLVVSCASRRVELDTRPHHVNTLVSIELRKPVAMDLEETYVVDRQPKRTSVYTRAL*TP 367
           A  V+ C  R+V LD  P+  + +     R+ +   +++ +++ R+P  T +++R+    
Sbjct: 11  ASSVLKCGKRKVWLD--PNEGSDISMANSRQNIRKLVKDGFII-RKP--TKIHSRS--RA 63

Query: 366 RPFD-SSAKNRHASESERKPQDETRLP 289
           R  + +  K RH+   +RK   E RLP
Sbjct: 64  RQLNIAKRKGRHSGYGKRKGTREARLP 90


>At5g22590.1 68418.m02638 hypothetical protein
          Length = 304

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 27/103 (26%), Positives = 42/103 (40%)
 Frame = +1

Query: 196 NIIISYNHQQL*SRLCMLFEHCETGRGPVCTWQPRLVLWLSFALGSVSVFCARVKGSGSL 375
           N+ +   H Q  + L + F+  E G G +C  Q  L LW+         F   +      
Sbjct: 137 NVNVLRVHSQTLTSLSVEFDLGEWGLGLLCFGQRYLGLWIDDPRFKYLNFKHELS----- 191

Query: 376 ESARVHTRSFWLSVNYVSFF*VHRNGLPKFNRYECVYMVWSRV 504
           +S  +   +  + VN+V F+  H  GL K      V+   SRV
Sbjct: 192 DSKTISNLNSLVKVNFVGFYMSHGVGLSKQQMARNVFTGISRV 234


>At4g39430.1 68417.m05580 expressed protein  ; expression supported
           by MPSS
          Length = 405

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 487 MVWSRVELYATRGTRDNETSVYSRLKNLLMVYSYLFDARFALLNSQK 627
           +++S V L + +   DNE S  SRL  L  +++     R+ LL  +K
Sbjct: 15  VLFSAVYLLSRKDRNDNEISAVSRLLGLATMFATEMIRRYGLLEYRK 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,154
Number of Sequences: 28952
Number of extensions: 333215
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)