Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0092
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0246 - 16393943-16394410                                         29   4.2  
08_01_0811 - 7872886-7873261,7873446-7873861,7874253-7874262,787...    29   5.6  
08_02_1308 - 26024491-26025405                                         28   7.4  
10_05_0069 + 8782535-8782920,8783016-8783281,8783588-8783869,878...    28   9.8  

>12_02_0246 - 16393943-16394410
          Length = 155

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
 Frame = -2

Query: 225 PCDVLSPN-VHQ---LQGSYPQTRHAAGV 151
           P D L+PN VHQ   L GS P++ HAAGV
Sbjct: 22  PQDGLAPNGVHQGHRLDGSTPESLHAAGV 50


>08_01_0811 -
           7872886-7873261,7873446-7873861,7874253-7874262,
           7874370-7875334
          Length = 588

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 EFVDMTLAADGHLVKVHRMVLCLVSPYIK 254
           E  D+T + DG L   HR++L + SP  +
Sbjct: 173 EGADVTFSVDGELFAAHRVILAMRSPVFR 201


>08_02_1308 - 26024491-26025405
          Length = 304

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 126 SSICNGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIK 254
           S I   L  L  RGE  D++   DG     HR VL   SP  +
Sbjct: 112 SDIGAHLGGLLDRGEGTDVSFLVDGETFPAHRAVLAARSPVFR 154


>10_05_0069 +
           8782535-8782920,8783016-8783281,8783588-8783869,
           8784559-8784632,8787230-8787461,8788067-8788077
          Length = 416

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 17  FKKGKLISISTFKYCKLLLTD-KHGMSTPSCVVGI 118
           FKKG+L ++ +    K+L+TD + G +T + V G+
Sbjct: 223 FKKGELTNLKSSNPVKMLITDTRVGRNTKALVAGV 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,371,623
Number of Sequences: 37544
Number of extensions: 476663
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)