Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0092
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01460.1 68418.m00059 LMBR1 integral membrane family protein ...    31   1.2  
At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7) si...    29   2.7  
At3g08930.2 68416.m01039 LMBR1 integral membrane family protein ...    29   2.7  
At3g08930.1 68416.m01040 LMBR1 integral membrane family protein ...    29   2.7  
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ...    29   3.5  
At1g09980.1 68414.m01126 expressed protein contains Pfam profile...    29   3.5  
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ...    28   6.2  

>At5g01460.1 68418.m00059 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 509

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -2

Query: 213 LSPNVHQLQGSYPQTRHAAGVWSIRCIYYFDTIPTTQLGVDIPCLSVSSNLQYLNVEIEI 34
           L  +V+ L+  YPQ   A   W+   + Y        LG+ +    ++  + YL V+  +
Sbjct: 300 LEEDVNLLEEMYPQGEQAETAWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPL 359

Query: 33  NFPFLNNV 10
           + PFLN V
Sbjct: 360 S-PFLNEV 366


>At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7)
           similar to SP|O22446 Histone deacetylase (HD)
           {Arabidopsis thaliana}; contains Pfam profile PF00850:
           Histone deacetylase family
          Length = 409

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = -2

Query: 216 VLSPNVHQ-LQGSYPQTRHAAGVWSIRCIYYFDTIPT-TQLGVDIPCLSVSSNLQYLNVE 43
           +LS N+H+ ++ ++P    A+       + Y + + + T   V  P  SVS NL+  NV+
Sbjct: 43  ILSYNLHRHMEINHPDLADASDFEKFHSLEYINFLKSVTPETVTDPHPSVSENLKRFNVD 102

Query: 42  IEINFPFLNNV 10
           ++ + P  +N+
Sbjct: 103 VDWDGPVFHNL 113


>At3g08930.2 68416.m01039 LMBR1 integral membrane family protein
           contains 5 transmembrane domains; contains Pfam PF04791:
           LMBR1-like conserved region; similar to unknown protein
           GB:BAA83351 [Oryza sativa]
          Length = 526

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -2

Query: 213 LSPNVHQLQGSYPQTRHAAGVWSIRCIYYFDTIPTTQLGVDIPCLSVSSNLQYLNVEIEI 34
           L  +V+ L+  YPQ   A   W+   + Y        +G+ +    V+  + YL V+  +
Sbjct: 317 LEEDVNLLEEMYPQGEQAETAWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPL 376

Query: 33  NFPFLNNV 10
           + PFLN V
Sbjct: 377 S-PFLNEV 383


>At3g08930.1 68416.m01040 LMBR1 integral membrane family protein
           contains 5 transmembrane domains; contains Pfam PF04791:
           LMBR1-like conserved region; similar to unknown protein
           GB:BAA83351 [Oryza sativa]
          Length = 310

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -2

Query: 213 LSPNVHQLQGSYPQTRHAAGVWSIRCIYYFDTIPTTQLGVDIPCLSVSSNLQYLNVEIEI 34
           L  +V+ L+  YPQ   A   W+   + Y        +G+ +    V+  + YL V+  +
Sbjct: 101 LEEDVNLLEEMYPQGEQAETAWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPL 160

Query: 33  NFPFLNNV 10
           + PFLN V
Sbjct: 161 S-PFLNEV 167


>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 491

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 114 ESYRSSICNGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIK 254
           ES RS   + L  L     F D+T + +G LV  HR +L   S + +
Sbjct: 6   ESLRSLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFR 52


>At1g09980.1 68414.m01126 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           non-consensus GC donor splice site at exon boundary
           144764
          Length = 802

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 237 RGIAPCDVLSPNVHQLQGSYPQTRHAAGVWSIRCIYYFDT 118
           RG+A  ++L+  + Q++G  P+T H   V+ +RC   FDT
Sbjct: 726 RGVAFLEMLNNCMDQIRGPSPETPHHQRVF-MRCDVNFDT 764


>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 467

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 114 ESYRSSICNGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIK 254
           ES +S   + L  L     F D+T + +G LV  HR +L   S + +
Sbjct: 7   ESLKSMSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFR 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,116
Number of Sequences: 28952
Number of extensions: 387927
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)