Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0091
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   2.9  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   8.9  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   8.9  

>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 356 CVIATGNDNHY-RHKICLSNNFSIHISISTYIQF 258
           C    GND  +  +  CLSNN +I I +  +I+F
Sbjct: 222 CYGPHGNDKLFTEYGFCLSNNPNISIQLDRFIEF 255


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 288 SYLDKYIYTILVMF*LNKFSL*STYLCQTIIVNK*KRQCI*YI 160
           S  D+   T L++  LNKFS  +  L +T  V   + QC+ Y+
Sbjct: 246 SIYDEQSLTSLILARLNKFSYPNYVLSRTSNVFNCRAQCLEYV 288


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/28 (25%), Positives = 19/28 (67%)
 Frame = -2

Query: 344 TGNDNHYRHKICLSNNFSIHISISTYIQ 261
           TG +++Y H  C  NN+  + +++++++
Sbjct: 556 TGLNDYYAHMCCEQNNWDYNSALASFLE 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,278
Number of Sequences: 5004
Number of extensions: 56056
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)