Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0091
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 121 IPCRSIVCDRYIGYVLYTLTLSFIN 195
           I C ++VC  +  +++ T+ L FIN
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLWFIN 409


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 165 YIADITVTHDGSARY 121
           Y   + VTHDGS  Y
Sbjct: 87  YQTSVVVTHDGSCLY 101


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 165 YIADITVTHDGSARY 121
           Y   + VTHDGS  Y
Sbjct: 87  YQTSVVVTHDGSCLY 101


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 165 YIADITVTHDGSARY 121
           Y   + VTHDGS  Y
Sbjct: 87  YQTSVVVTHDGSCLY 101


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 165 YIADITVTHDGSARY 121
           Y   + VTHDGS  Y
Sbjct: 87  YQTSVVVTHDGSCLY 101


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 165 YIADITVTHDGSARY 121
           Y   + VTHDGS  Y
Sbjct: 87  YQTSVVVTHDGSCLY 101


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 378 NIYLIPAMCYSNG 340
           N++  P +CY NG
Sbjct: 3   NVWRFPYLCYKNG 15


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 378 NIYLIPAMCYSNG 340
           N++  P +CY NG
Sbjct: 41  NLWRFPYLCYKNG 53


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 378 NIYLIPAMCYSNG 340
           N++  P +CY NG
Sbjct: 94  NLWRFPYLCYKNG 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,183
Number of Sequences: 438
Number of extensions: 4496
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)