Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0090
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    24   6.0  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   7.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   7.9  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 190 THAKITNTCVAIPFIAHLKCKHMRVSV 110
           ++AK+   C     IAHL  + MR+S+
Sbjct: 134 SYAKVREYCTNAGQIAHLSLELMRISI 160


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 169 TCVAIPFIAHLKCKHMRVSVTQ 104
           T   I F  HL  KH R++VTQ
Sbjct: 501 TIYVIYFFGHLIRKHSRLAVTQ 522


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -1

Query: 274  YQITDLYYKAKGHLYQIAFFHLSIS-----SY*THAKITNTCVAIPFIAHLKCKHMRVSV 110
            Y   + YY+A   LY +A  HL+ S      Y T AK   +C  +P     K   + +SV
Sbjct: 1004 YAKREQYYQASIVLYDLATTHLAFSLEQRIEYLTRAKGFGSC-HVPNSLRHKMNKVMLSV 1062

Query: 109  TQSI 98
             + +
Sbjct: 1063 LEQL 1066


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,355
Number of Sequences: 5004
Number of extensions: 24380
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)