Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0090
         (355 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20928| Best HMM Match : NHL (HMM E-Value=0)                         29   1.4  
SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)        26   7.7  

>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
          Length = 795

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 161 CNSFYCTSKM*AHARLSXTINT*KIMSFIE 72
           CN F C S + AH R+  T +  +IMSFIE
Sbjct: 127 CNEFLCDSCVRAHQRVRLTKDH-RIMSFIE 155


>SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)
          Length = 573

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 36  FERHSFLPLYYVFNKRHY 89
           F+R  FLPLYY  N  H+
Sbjct: 391 FQRFRFLPLYYSINGVHH 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,398,611
Number of Sequences: 59808
Number of extensions: 174638
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)