Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0090
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF016686-9|AAB66242.1|  300|Caenorhabditis elegans Hypothetical ...    26   8.7  

>U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical
           protein F49E10.1 protein.
          Length = 744

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 353 TALLSVNLGKISCQKIFFS 297
           T+L SVNLGK+   ++F+S
Sbjct: 302 TSLFSVNLGKMRSMRVFYS 320


>AF016686-9|AAB66242.1|  300|Caenorhabditis elegans Hypothetical
           protein R07C3.13 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 9   CRLL*PNVTFERHSFLPLYYVFNKRHYFL 95
           CR L P+  F+ H FL  + V  +R + L
Sbjct: 70  CRCLLPSKCFQAHFFLSCFVVCGQRSWLL 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,821,279
Number of Sequences: 27780
Number of extensions: 138507
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)