Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0090
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   9.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    20   9.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 274 YQITDLYYKAK 242
           YQ+TDLY K K
Sbjct: 285 YQLTDLYKKIK 295


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 222 PSFTSRYHLIRLTRKLLTRVLQFLL 148
           P     Y L+  T+  +  +LQF+L
Sbjct: 35  PLLKKEYPLVMDTKLKIIEILQFIL 59


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 222 PSFTSRYHLIRLTRKLLTRVLQFLL 148
           P     Y L+  T+  +  +LQF+L
Sbjct: 3   PLLKKEYPLVMDTKLKIIEILQFIL 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,621
Number of Sequences: 438
Number of extensions: 1598
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)