Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0090
         (355 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom...    27   4.7  
At1g54920.2 68414.m06269 expressed protein                             26   6.3  
At1g54920.1 68414.m06270 expressed protein                             26   6.3  

>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
           domain-containing protein contains Pfam profiles
           PF00168: C2 domain; contains PF02893: GRAM domain;
           similar to Chain A, Crystal Structure Of Synaptotagmin
           Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
           III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
          Length = 1859

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 354 DSPFKCKFGKNIMSKNLLQLFVDAL 280
           D PF C   + ++S NLL LF+D +
Sbjct: 90  DDPFACHL-EELLSSNLLTLFLDTM 113


>At1g54920.2 68414.m06269 expressed protein
          Length = 890

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 280 N*YQITDLYYKAKGHLYQIAFFHL 209
           N YQ  DL++K K  LY IA +HL
Sbjct: 572 NDYQ--DLFHKLKIELYHIALYHL 593


>At1g54920.1 68414.m06270 expressed protein
          Length = 430

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 280 N*YQITDLYYKAKGHLYQIAFFHL 209
           N YQ  DL++K K  LY IA +HL
Sbjct: 236 NDYQ--DLFHKLKIELYHIALYHL 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,174,280
Number of Sequences: 28952
Number of extensions: 120855
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)