Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0089
         (816 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.72 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   3.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   3.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   6.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   6.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   6.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 569  KERKVITWP*SKSI*KKQAAHK 634
            KERK+  WP S    +K+  HK
Sbjct: 1139 KERKICDWPKSAKCEEKKPGHK 1160


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 124 VKEEDLITCNIETEII*SFIAPTHNIIYRYLPKYRILNS 8
           VK+E   TC  +TE    F  P  N  Y+Y   Y   N+
Sbjct: 191 VKDE---TCQYDTESSYQFNDPQFNFNYQYNQAYSNYNN 226


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 124 VKEEDLITCNIETEII*SFIAPTHNIIYRYLPKYRILNS 8
           VK+E   TC  +TE    F  P  N  Y+Y   Y   N+
Sbjct: 211 VKDE---TCQYDTESSYQFNDPQFNFNYQYNQAYSNYNN 246


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 179 SNEQLTHIIEQFHF 220
           +N+QLT + ++FHF
Sbjct: 261 TNKQLTELEKEFHF 274


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 338 FTSSRIPVFSLSVRNAVLMK 279
           F   R P F L+VRN  ++K
Sbjct: 634 FQGVRSPTFHLTVRNTSIIK 653


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 179 SNEQLTHIIEQFHF 220
           +N+QLT + ++FHF
Sbjct: 50  TNKQLTELEKEFHF 63


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 179 SNEQLTHIIEQFHF 220
           +N+QLT + ++FHF
Sbjct: 50  TNKQLTELEKEFHF 63


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 365 TDMTSSIQYFTSSRIPVFSLSVRNA 291
           TDMT +      ++IP  S++V+ A
Sbjct: 3   TDMTPTAGQLYGAQIPAMSMNVKAA 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,599
Number of Sequences: 336
Number of extensions: 3803
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)