Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0089
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    28   1.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   4.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   4.2  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   5.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   9.7  

>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 342 IFYLFQNPGIFFVRTERSIDEISPISHLSDFFYPINSQMSLK*NCSIMWVSCSLLNSSG 166
           I Y   NPG  FV++  S+ ++    +     +P N   S K N +++ +S S +N SG
Sbjct: 32  IIYGLGNPGSAFVKSRHSLGKLMVSMYADSMAFPKN-WPSTKENLTLV-LSTSYMNDSG 88


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 646 SLMYLMCCLFLLN*FALRPCYYFSFFFCLNRLRVRIIDDFPFMIITFMCEHFVVTFSSFI 467
           SL   +   F    F L   + FSF F L+++ +     FP +   F     V  F SF+
Sbjct: 111 SLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFL 170


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +3

Query: 48  ILCVGAIKLQIISVSMLHVIKSSSLTSEKQWLFLTK 155
           +  + +  LQII ++ L ++KS +L  ++ + F+++
Sbjct: 251 VFAISSSSLQIIDINTLSLVKSINLKDDESFSFISR 286


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 592  PCYYFSFFFCLNRLRVRIIDDFPFMI--ITFMC-EHFVVTF 479
            P  YF +FF  NR+ + ++D F   +  + F+    F+V F
Sbjct: 1797 PKGYFGYFFKTNRVEMEVLDSFKQQVAKLQFLAGAEFIVKF 1837


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +3

Query: 303 GQRKYRDSGRGKILNRTRHISP--EPSRSLNKIK--ETRHT 413
           G   +++ G GK+  R  H+SP  E ++SL   +  E++HT
Sbjct: 88  GSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWRGSESKHT 128


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 662 SILNIFINVSYVLPVSSKLICFK 594
           SIL I + ++++ P+ S L+CF+
Sbjct: 132 SILQIGVTLTFICPMLSFLLCFR 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,460
Number of Sequences: 5004
Number of extensions: 63193
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)