Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0089
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4)                      25   3.1  
SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8)                      29   4.5  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 330 RGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMK 509
           R +++ RT        RS N I E++++ +++       L+GH+K+    N   +  H  
Sbjct: 114 RREVVKRT--FERRKQRSNNNIIESKNSCLQQRNETAVRLNGHVKQSSTNNSQGRAEHNS 171

Query: 510 VIIIKGKSSMILTLSLF 560
              +    S+I+  SLF
Sbjct: 172 RTTLHRPKSLIVLTSLF 188


>SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4)
          Length = 712

 Score = 25.4 bits (53), Expect(2) = 3.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 609 FRRNRQHIRYINEDVQ 656
           FRRNR+H+R   ED++
Sbjct: 631 FRRNRRHLRRTQEDMK 646



 Score = 22.6 bits (46), Expect(2) = 3.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
 Frame = +3

Query: 375 SRSLNKIKETRHTTVERIKPPPDLLSG------HMKR---IKLENVTTK 494
           +RS  ++KE +   V RI+PP  +  G      H++R   I+L NV T+
Sbjct: 578 NRSAKELKELKPGDVVRIEPPRGIGRGKEWTKAHVERKVDIRLYNVRTE 626


>SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 321 DSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIK 431
           D GRG   N     SP+P R+ +++  +   T E  K
Sbjct: 37  DRGRGTARNNYSRYSPQPGRTTSRVHHSNQKTTEASK 73


>SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8)
          Length = 207

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 351 TRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKL 476
           ++H  P P RS   I   RH++     PPP  +  H  R+ L
Sbjct: 29  SKHTPPSPPRSAVFITIARHSSKHTPPPPPRSVVFHYHRVTL 70


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 485 NNKVLTHESNNHKRKIINDPNSEPIQAKKERK 580
           NNK  T +SN     I ND NSE    KK +K
Sbjct: 132 NNKDETKDSNEGSLTISNDLNSEKKDKKKHKK 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,780,673
Number of Sequences: 59808
Number of extensions: 423504
Number of successful extensions: 1078
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)