Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0089
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    28   9.2  
AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchang...    28   9.2  

>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 698 NIAMSFTQYIVMYQNYAFICSHLFNDDEVIHL 793
           N    +T +I +Y NY F C+  F D++  HL
Sbjct: 546 NTTYFYTNFIKVY-NYQFTCNVSFRDNQTAHL 576


>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 622 LFLLN*FALRPCYYFSFFF-CLNRLRVRIIDDFPFMIITFMCEHFVVTFSSFI 467
           LF +N   +   + F FF  CLNR+ + ++D + + ++ + C+    T   F+
Sbjct: 53  LFHINVIIIFQVHLFGFFIHCLNRIILHVLDLYSYFLLDY-CDMPPSTIRCFV 104


>AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchangers
           protein 9 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 443 FIIRSHETDKARKCNNKVLTHESNNHKRKIINDPNSEPIQAKKERKVIT 589
           FI      +  R  NN    +++ N KR I+N   SEP     ERK+ T
Sbjct: 265 FIKNLTRANLKRTTNNN--NNDNKNEKRGIVNLGFSEPYSIPSERKIST 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,520
Number of Sequences: 27780
Number of extensions: 345491
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)