Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0089
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ...    31   0.91 
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ...    31   0.91 
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    30   2.1  
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    28   8.5  
At1g10420.1 68414.m01174 hypothetical protein                          28   8.5  

>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 420

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = +3

Query: 417 VERIKPPPDLLSGHMKRIKLENVTTKCSHMKVIIIKGKSSMILTLSLFXXXXXXXXXHGL 596
           V+R+ P P++    +  + +EN+    S+  +  I GK+  I ++S+           G 
Sbjct: 178 VKRLSPLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGG 237

Query: 597 KANQFRRNRQHIRYINEDVQNAQE 668
           K   F R R H     E V+ A++
Sbjct: 238 KKENFIRTRLHAFVEYETVEAAEK 261


>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 422

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = +3

Query: 417 VERIKPPPDLLSGHMKRIKLENVTTKCSHMKVIIIKGKSSMILTLSLFXXXXXXXXXHGL 596
           V+R+ P P++    +  + +EN+    S+  +  I GK+  I ++S+           G 
Sbjct: 178 VKRLSPLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGG 237

Query: 597 KANQFRRNRQHIRYINEDVQNAQE 668
           K   F R R H     E V+ A++
Sbjct: 238 KKENFIRTRLHAFVEYETVEAAEK 261


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 425 NQTPS*FIIRSHETDKARKCNNKVLTHESNNHKRKIINDPNSEPIQAKKERK 580
           ++ P  F    +E ++A   NN+V T   N+ +   +N+ + E  +A +ERK
Sbjct: 70  DRDPKNFSDEKNEENEAATENNQVKTDSENSAEGNQVNESSGEKTEAGEERK 121


>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 45  IILCVGAIKLQI--ISVSMLHVIKSSSLTSEKQWLFL 149
           ++LC   I LQ+  I+ S+ H  K+SSL+    +LFL
Sbjct: 838 LLLCASEISLQMGNIAESINHARKASSLSLPSSYLFL 874


>At1g10420.1 68414.m01174 hypothetical protein
          Length = 133

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 324 SGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKP-PPDLLSGHMKRIKLENVTTK 494
           +G+G I +R+ H S E   S+NK K+T    + +++    DL S    +  LE    K
Sbjct: 61  AGKGAISHRS-HYSCESGSSINKQKQTEEDCIRKVQELQADLASSRETQEALERKVWK 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,505,988
Number of Sequences: 28952
Number of extensions: 301835
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)