Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0088
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.93 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.93 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    24   1.6  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    24   1.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   3.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   6.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.7  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +2

Query: 161 KSDNDCP-VKNCKQNTRRLAISEWPLWQQRVSAY----ARSDARRQNRGHTTGQRRRVQG 325
           K DN  P  KN ++ T    ++     + R        A ++ +R++RG   G    +  
Sbjct: 289 KKDNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKSRGEVDGLGENMMD 348

Query: 326 IGRTRHR 346
           +  TRH+
Sbjct: 349 MSLTRHQ 355


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +2

Query: 161 KSDNDCP-VKNCKQNTRRLAISEWPLWQQRVSAY----ARSDARRQNRGHTTGQRRRVQG 325
           K DN  P  KN ++ T    ++     + R        A ++ +R++RG   G    +  
Sbjct: 289 KKDNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKSRGEVDGLGENMMD 348

Query: 326 IGRTRHR 346
           +  TRH+
Sbjct: 349 MSLTRHQ 355


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 119 YFYWLGFVHSTYAHK 163
           YF++L ++++TY+ K
Sbjct: 87  YFFYLSYIYTTYSRK 101


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 119 YFYWLGFVHSTYAHK 163
           YF++L ++++TY+ K
Sbjct: 43  YFFYLSYIYTTYSRK 57


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 29/99 (29%), Positives = 39/99 (39%)
 Frame = +2

Query: 458 RETCTHRVPGRALTPRASGLDLTAASIPTSTATQLPPAPADAPVELTTKRSEPSPIPHVP 637
           R     R P  A        +  A   PTS  T+L P+P   P   T   S   P+ H  
Sbjct: 288 RSYAPERYPPLAQGVNDDAFNSVATPTPTSVMTELYPSP--VPGHST---SPNLPLTH-N 341

Query: 638 RERRPDPGASVSMSAISPLSGLGHIPGLSHSHLGLSFNE 754
               P P  S+  S  S L  L +I  LS S  G+++ +
Sbjct: 342 IAHNPYPSHSIYPS--SNLMPLNNIQNLSQS--GINYKD 376


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 545 STATQLPPAPADAPVELTTKRSEPSPIPH 631
           S  + LPP P    +   T+++EPS   H
Sbjct: 480 SPMSSLPPYPNRTQITEVTQQTEPSIYQH 508


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 643 AQTGPRGQCFYE 678
           +  GP G CFYE
Sbjct: 665 SDVGPSGDCFYE 676


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 152 YAHKSDNDCPVKNCK 196
           Y H++ NDC V  C+
Sbjct: 64  YCHENINDCKVNPCE 78


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 279 DKIEAI---QRVNDGESKASVARDIGVPESTLRGWCKN 383
           D +EA+    R  D   +  VA  I +PES ++ W KN
Sbjct: 82  DVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKN 119


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 563 PPAPADAPVELTTK-RSEPSPIPHVPRERRPDPGASVSMSAISPLSGLGHIP 715
           PPAP  A   +++   + P+  P  P        ASV+ +A +PL    HIP
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAP-PPATTSSGSPASVASNASAPL----HIP 58


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 476 RVPGRALTPRASGLDLTAASIPTSTATQLPPAPADAPV 589
           +V  R   P   G  +  A IP  +   + P P +AP+
Sbjct: 390 KVEPRDKAPSPYGGQMFEAPIPNVSPHYVTPTPPEAPL 427


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 321 KASVARDIGVPESTLRGWCKN 383
           +  VA  I +PES ++ W KN
Sbjct: 157 REEVAVKINLPESRVQVWFKN 177


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 112 GCAVRGTCH*FHRCVHKSLSEDARNAMH 29
           GC +RGT    H+  + S  +D     H
Sbjct: 216 GCQIRGTFFVSHKYTNYSAVQDLHRRGH 243


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 112 GCAVRGTCH*FHRCVHKSLSEDARNAMH 29
           GC +RGT    H+  + S  +D     H
Sbjct: 223 GCQIRGTFFVSHKYTNYSAVQDLHRRGH 250


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 497 TPRASGLDLTAASIPTSTATQLPPAPADAPVELTT 601
           T  A+ +DL+   +PT   T  P +    P E  T
Sbjct: 24  TSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERIT 58


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 497 TPRASGLDLTAASIPTSTATQLPPAPADAPVELTT 601
           T  A+ +DL+   +PT   T  P +    P E  T
Sbjct: 24  TSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERIT 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,003
Number of Sequences: 336
Number of extensions: 3823
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)