Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0088
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.44
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 29 0.77
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 1.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 1.4
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 28 1.8
SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 27 2.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.5
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 9.5
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +2
Query: 473 HRVPGRALTPRASGLDLTAASIPTSTATQLPPAPADAPVELTTKRSEPSPIPHVPRERRP 652
H V + P+++ +A P +PP P+ P+ + P P+P P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Query: 653 DPG 661
+PG
Sbjct: 1745 NPG 1747
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 279 RRASERA*ALTLC--CHNGHSLIASRRVFC 196
+R S + +TLC C GHS +++R VFC
Sbjct: 181 KRKSRKVDMVTLCSVCQRGHSPLSNRIVFC 210
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 545 STATQLPPAPADAPVELTTKRSEPSPIPHVPRERRPDPGASVSMSAISPLSGLGHIPGL 721
S AT P + A+ P + S P P+P+VP +S+ + P + H PG+
Sbjct: 215 SPATPAPTSAANTPATIAAT-SIP-PVPNVPLVGATTAVPPLSIPNVLPFTAAQHFPGM 271
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 524 TAASIPTSTATQLPPA--PADAPVELTTKRSEPSPIPHVPRERRPDPGASVSMSAISPLS 697
TA P TAT P+ P PVE + ++ +P P E +P+P S + +P S
Sbjct: 286 TAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVP--PAEAKPEP-VPASAAERAPTS 342
Query: 698 GLGHIP 715
+P
Sbjct: 343 ESTTVP 348
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 500 PRASGLDLTAASIPTSTATQLPPAPADAPVELTTKRSEPSPIPHVPR--ERRPDPGASVS 673
P++ D T ++ L P P +P T RS P P VP + PDP A+ S
Sbjct: 406 PQSDANDSTV-NLNQPNYANLTPTPQVSPKRPTYSRSSPLPSASVPALGDGSPDPPAAPS 464
Query: 674 M 676
+
Sbjct: 465 I 465
>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 95
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 305 QRRRVQGIGRTRHRRARVHSARLVQERGQTALHDVTIIVTRHGQEQ*RRASRETCTHRVP 484
+R+RV+ +G T+HR+ R R++QE L ++ ++ + AS T R+
Sbjct: 4 KRKRVEELGETKHRQVR---QRILQEHKNDILENLAFELSDKVRRLRSNASLLASTIRMR 60
Query: 485 GR---ALTPRA 508
G A PRA
Sbjct: 61 GEMRIAAIPRA 71
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +2
Query: 452 ASRETCTHRVPGRALTPRASGLDLTAASIPTST--ATQLPPAPADAPVELTTKRSEPSPI 625
ASR T T VP P ++ L ++ P+ A PP P AP+ P+
Sbjct: 409 ASR-TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467
Query: 626 PHVPRERRPDPGASVSMSAISPLSGLGHIP 715
P P P P + + +A P++ + +P
Sbjct: 468 PLPPAAPAPPPAPAPAPAA--PVASIAELP 495
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 521 LTAASIPTSTATQLPPAPADAPVELTTKRSEPSPIPHVPRERRPDPGASVSMSAISP 691
L +PT+ A +P ++AP T + S PS PH P P +S SM++ +P
Sbjct: 1226 LPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPS--PH--SNASPSPTSS-SMASAAP 1277
Score = 27.5 bits (58), Expect = 2.4
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +2
Query: 524 TAASIPTSTATQLPPAPA-DAPVELTTKRSEPSPIPHVPRERRPDP--GASVSMSAISPL 694
TA +PT +A LPP P A S +P PR P P AS S ++ S
Sbjct: 1215 TAPPVPTPSA-GLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMA 1273
Query: 695 SGLGHIPGLSHSHLGLSFNEIATISR 772
S +S S +E +T SR
Sbjct: 1274 SAAPARTSVSRSKSKAERHETSTSSR 1299
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 533 SIPTSTATQLPPAPADAPVELTTKRSEPSPI-PHVPRERRPDPGASVSMS 679
++P+ LP P P L ++ P P+ P+V + P P S S S
Sbjct: 113 ALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSSSGS 162
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 737 GLSFNEIATISRFGATQPGCRLV 805
G ++ E +S F ATQPG R++
Sbjct: 512 GATYEEAHFVSEFNATQPGVRII 534
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 500 PRASGLDLTAASIPTSTATQLPPAPADAPVELTTKRSEPSPIP 628
P S + A + P ++A+ PAPA A + + P P P
Sbjct: 62 PPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 265 ARIGAYPLLP*WPLAYCEPACVLFTIFDRAVVIAF 161
+ +G+ L+ P YC P VL + DRA I F
Sbjct: 259 SNMGSSGLIAFAPFDYCAPMHVLQAVQDRAKAILF 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,769
Number of Sequences: 5004
Number of extensions: 59832
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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