Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0088
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.038
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.067
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.088
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 0.038
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 270 TPGDKIEAIQRVNDGESKASVAR-DIGVPESTLRGWCKNE 386
           +P D   A++ +  G++    A  + G+P  TL G CK E
Sbjct: 521 SPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKRE 560


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 0.067
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +2

Query: 416 IVTRHGQEQ*RRASRETCTHRVPGRALTPRASGLDLTAASIPTSTATQLPPAPADAPVE- 592
           I+++H Q+           H +PG A   R S    T A+  T  +  LP +PAD+ V  
Sbjct: 194 ILSQHPQQHGLGVQNGYGRH-LPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSD 252

Query: 593 -LTTKRSEPSPIPHVPRERRPDPGASVSMSAISPLSGLGHIPGLSHSH 733
             ++  S  +   ++  + R +P +S+  S  S  S L    G S  H
Sbjct: 253 VESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHLSSALGRSACH 300


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.088
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 539 PTSTATQLPPAPADAPVELTTKRSEPSPIPHVPRERRPD--PGASVSMSAISPLSGLGHI 712
           P+S A    P+P  +P +   + S P+P    P    P   P  + S   ISP SG+  +
Sbjct: 16  PSSGAPGPQPSPHQSP-QAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQM 74

Query: 713 PGLSHSHL 736
             L   H+
Sbjct: 75  QQLLQQHI 82


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 240 CHNGHSLIASRRVFCL 193
           CH+G SL  SR + CL
Sbjct: 136 CHSGSSLTKSRLMRCL 151


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 115 TIFLLVGIRPFNVRS*KR*RLP--CQKL*TKHTPARNKRVAIMATKGKRLCAL*RPATKS 288
           +I + V I  +N R  +  R+P   +K+  K+ P          T+ + +  +      +
Sbjct: 310 SILVTVIIINWNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTLPT 369

Query: 289 RPYNGSTTESPRH 327
             Y+GS TE P+H
Sbjct: 370 STYSGSPTELPKH 382


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 530 ASIPTSTATQLPPAPADAPVELTTKRS 610
           AS P+S+ +  PPA   A     +KR+
Sbjct: 518 ASAPSSSTSSSPPAKGAAAAGQPSKRN 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,159
Number of Sequences: 438
Number of extensions: 4309
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)