Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0087
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.66 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 514 CRFCIKIYYVLNKLQFGRTTNMKKCRIGHFC 606
           C++C K+Y  L  L+    T+   C+  H C
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPCKC-HLC 48


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 671 NKIYTSGNDSHNTYMVHMRP 612
           N +Y S   SH+ Y V+M P
Sbjct: 264 NNLYYSPLTSHSLYYVNMEP 283


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 354 HQRKSGLSLS*AYYSKHGDNDVSIYFYTAS*AKTKRAKIML 476
           ++R S L  +  YYSKH     + Y   +S    ++ KI L
Sbjct: 374 NRRNSCLGSTETYYSKHNTQQFTQYIPESSSNLQEKTKIDL 414


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 499 SETRICRFCIKIYYVLNKLQ 558
           S+  IC  C ++Y  LN L+
Sbjct: 30  SKEPICNICKRVYSSLNSLR 49


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 180 NAIFTSIIVILIVYDSEN 127
           N +FTSI  +L++  SEN
Sbjct: 542 NGVFTSIASLLLLNLSEN 559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,983
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)