Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0087
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5...    29   2.8  
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put...    29   2.8  

>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
           identical to GB:AAF22525 GI:6652886 from [Arabidopsis
           thaliana]
          Length = 424

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 245 TESKHE-FNESIINYQVKKKKCLTLY 171
           TE  HE FNE II  Q KKK  L  Y
Sbjct: 398 TEVNHEDFNEGIIQVQAKKKASLNYY 423


>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
           putative identical to SP:O04019 from [Arabidopsis
           thaliana]
          Length = 423

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 245 TESKHE-FNESIINYQVKKKKCLTLY 171
           TE  HE FNE II  Q KKK  L  Y
Sbjct: 397 TEVNHEDFNEGIIQVQAKKKASLNYY 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,146
Number of Sequences: 28952
Number of extensions: 224453
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)