Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0086
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.5  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 579 RRQTQREHTATLADTGRREPTPADTRLHEP 668
           +R+        LA  GRR P PA +R H P
Sbjct: 313 QRRVAAVQVPQLAGGGRRGPGPARSRRHLP 342


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 219 PPPPTPRTACVERRTP 172
           PP P PR   V RR P
Sbjct: 250 PPTPKPRPTKVSRRKP 265


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 240 GAGALCIPPPPTPRTACVERRTPAGSWAAAPLRRAR 133
           G+ A   PP P     C+    P+G      +R+ R
Sbjct: 90  GSYAANCPPSPKDDEKCLSLERPSGGGKGKKMRKPR 125



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 277 RALRVRHTAAAGRSRGTLYPSPSHS 203
           R    RHT  +  +RGT   +P+ S
Sbjct: 276 RRTHTRHTTTSHNTRGTPRTTPASS 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,843
Number of Sequences: 336
Number of extensions: 2415
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)