Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0086
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   3.0  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   5.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   8.9  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect(2) = 3.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 219 PPPPTPRTACVERRTP 172
           PPPP PR+A    R P
Sbjct: 361 PPPPPPRSAPSTGRQP 376



 Score = 22.2 bits (45), Expect(2) = 3.0
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 297 PPTGPDCVLSESDTRRRRGGAGALCIPPPPTPRT 196
           PP  P    +        G + +   PPPP PR+
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 281 SGPVGGATAGAVEHKPSKPAKIKTLPSNASTMHPCMLLAYMKPAQEYRELAV---DGDKP 451
           +G V  A    V+H  SKP K  TL S  ST+   ++ A +K  +  + L+V   DG KP
Sbjct: 184 NGDVTRAIEKIVQHGSSKPQKPSTLTSTKSTIK--LVSARLK--KRNKNLSVHFEDGTKP 239


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -3

Query: 249  RRGGAGALCIPPPPTPRTACVERRTPAGSWAAAPLRR 139
            RRG    + + P P     C+  R   G W    L+R
Sbjct: 954  RRGATSIVSVRPDPLFWPTCIIERDSNGRWCTKHLQR 990


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 287 PVGGATAGAVEHKPSKPAKIKTLPSNASTMHPCMLLAYMKPA 412
           P+ G        +PS P +   +PSN +T+ P  +   + PA
Sbjct: 522 PLDGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPA 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,718
Number of Sequences: 5004
Number of extensions: 40585
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)