Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0086
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    33   0.17 
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    32   0.38 
AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    31   0.67 
AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    31   0.89 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical ...    30   2.1  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    29   3.6  
X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2 prot...    29   3.6  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   3.6  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    25   3.6  
U41624-7|AAF99946.3|  302|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z83102-6|CAB05461.1|  417|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    28   8.3  
AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (...    28   8.3  

>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = -3

Query: 339 AGLLGLCSTAPAVAPPTGPDCVLSESDTRRRRGGAGALCIPPPPTPRTACVERRTPAGSW 160
           AG     + A A AP   P    + +     +GGA A    PPP P  A      PA + 
Sbjct: 329 AGAAPEAAPAAAAAPQPAPAPAAAAAPAGGYQGGAAAGAAAPPPAPAAAAAPEPAPAPAA 388

Query: 159 AAAP 148
           A  P
Sbjct: 389 APPP 392


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 243 GGAGALCIPPPPTP-RTACVERRTPAGSWAAAP 148
           GG G  C PPPP P    C      AG +A AP
Sbjct: 23  GGGGGCCAPPPPPPCGGGCGGGAPAAGGYAVAP 55


>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 196 CSRSGRGRDTKCPCSAPPPPCVGLG 270
           C   G G    C C+ PPPPC G G
Sbjct: 33  CGGCGGGCGGGCGCAPPPPPCCGGG 57


>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -3

Query: 375 MVLALEGRVLILAGLLGLCSTAPAVAPPTGPDCVLSESDTRRRRGGAGALCIPPPPTPRT 196
           ++  L  +  + +  LGL   A A A      C+L        +G AG+   PPP +   
Sbjct: 62  VLFLLAAKPSMFSSKLGLILCAVAAASTVTAGCLLFPITATAPKGRAGSAPAPPPGSSTE 121

Query: 195 ACVERRTPAGSWAAAPL 145
             V+R   A S  AA L
Sbjct: 122 DKVKRAAAAASPTAASL 138


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 318 STAPAVAPPTGPDCVLSESDT--RRRRGGAGALCIPPPPTPRTACVERRTPAGSWAAAPL 145
           S + + +PP  P    S S +   RRR    A   PP P  R +  + R+PA      P 
Sbjct: 350 SPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPA 409

Query: 144 RRAR 133
           RR R
Sbjct: 410 RRRR 413


>AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical
           protein C02E7.7 protein.
          Length = 66

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 243 GGAGALCIPPPPTPRTACVERRTPAGSWAAAP 148
           GG G  C PPPP P   C       G +AA P
Sbjct: 23  GGGGCGCAPPPPPPACGC---GGGGGGYAAPP 51


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 582  RQTQREHTATLADTGRR-EPTPADTRLHEPTR----ADTSRHRPVPRRQST 719
            R T +E + T+ +TG+R    P D RL    +    +  ++HRPVPR+  T
Sbjct: 1112 RNTDQEFS-TIKETGKRTNKNPDDVRLESMVKNFRESFAAKHRPVPRKLPT 1161


>Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical
           protein F53F1.5 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 243 GGAGALCIPPPPTPRTAC 190
           GG G  C PPPP P   C
Sbjct: 23  GGGGCGCAPPPPPPPCGC 40


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 243 GGAGALCIPPPPTPRTAC 190
           GG G  C PPPP P   C
Sbjct: 23  GGGGCGCAPPPPPPPCGC 40


>X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2
           protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 243 GGAGALCIPPPPTPRTAC 190
           GG G  C PPPP P   C
Sbjct: 23  GGGGCGCAPPPPPPPCGC 40


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -3

Query: 336 GLLGLCSTAPAVAPPTGPDCVLSESDTRRRRGGAGALCIPPPPTPRTACVE 184
           G  G C   P  A P    C  SE+D      G     IP    PR  C E
Sbjct: 575 GSYGNCGQIPG-ADPQVTGCCCSETDNCLAPAGVNVTAIPARRDPRIVCYE 624


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -3

Query: 336 GLLGLCSTAPAVAPPTGPDCVLSESDTRRRRGGAGALCIPPPPTPRTACVE 184
           G  G C   P  A P    C  SE+D      G     IP    PR  C E
Sbjct: 575 GSYGNCGQIPG-ADPQVTGCCCSETDNCLAPAGVNVTAIPARRDPRIVCYE 624


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 24.6 bits (51), Expect(2) = 3.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 229 CPCSAPPPPCVG 264
           CP   PPPPC G
Sbjct: 38  CPPPPPPPPCGG 49



 Score = 23.0 bits (47), Expect(2) = 3.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 208 GRGRDTKCPCSAPPPP 255
           G  R  +C C  PPPP
Sbjct: 29  GPQRPQQCCCPPPPPP 44


>U41624-7|AAF99946.3|  302|Caenorhabditis elegans Hypothetical
           protein F46C8.8 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
 Frame = -3

Query: 396 ASSMQGCMVLALEGRVLILAGLLGLCSTAPAVAPPTG----PDCVLSESDTRRRRGGAGA 229
           +SS  G M   L+    +LA       T      P G     D  L   ++R   GGA  
Sbjct: 78  SSSQNGIMAQMLQQYGGMLANAKFAQPTTTTTQAPAGFKAIIDSFLGTGNSRSAGGGADE 137

Query: 228 L-CIPPPPTPR 199
              +PPPPTPR
Sbjct: 138 YENLPPPPTPR 148


>Z83102-6|CAB05461.1|  417|Caenorhabditis elegans Hypothetical
           protein C54C8.7 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 288 GPDCVLSESDTRRRRGGAGALCIPPPPTPR 199
           G DC LS     +R  G     +PPP T R
Sbjct: 267 GDDCSLSRKYVCKREAGVPCTTVPPPVTVR 296


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
 Frame = -3

Query: 486 STTSPMVNIMFWGLSPSTASSRYSWAGFM*ASSMQGCMVLALEGRVLILAGLLGLCST-A 310
           +T++P    +F G +P+T ++  S A       + G              GL G  +T A
Sbjct: 413 TTSAPATGSLF-GTAPATTTAT-SAAPAASTGGLFGASSTTTPASTAPTGGLFGAATTTA 470

Query: 309 PAVAPPTGPDCVLSESDTRRRRGGAGALC-IPPPPTPRTACVERRTPA 169
           PA A PTG     + +      G  G L       TP TA    +TP+
Sbjct: 471 PAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPS 518


>AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (grd
           related) protein19 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 243 GGAGALCIPPPPTP 202
           GG G  C PPPP P
Sbjct: 37  GGGGGCCAPPPPPP 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,897
Number of Sequences: 27780
Number of extensions: 271322
Number of successful extensions: 1333
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)