Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0086
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.77 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.77 
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   9.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 461 MFTIGLVVDGKTYVGK 508
           +FTI + +DG+TY GK
Sbjct: 63  IFTIAVQIDGQTYEGK 78



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 380 PCMLLAYMKPAQEYRELAVDGDKPQNMMFTIGLVVDGKTYVG 505
           P  L+  + P   Y+ ++ +G+      FTI + +DG+T+ G
Sbjct: 156 PVALINELYPGVVYKCVSDNGESYAK--FTISVTIDGETFEG 195



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 13  IDGTVYQGYGENKLLAR 63
           IDG  Y+G G  K +A+
Sbjct: 70  IDGQTYEGKGRTKKMAK 86



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 752 NYKSKGHWRVFSALP 708
           N+ S GHW+   +LP
Sbjct: 234 NFPSSGHWQDQMSLP 248


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 603  TATLA-DT-GRREPTPADTRLHEPTRADTSRHRPVPRRQSTKHSPMSFT 743
            T +LA DT  R   TP       P  +D  R RP+PR    + SP ++T
Sbjct: 898  TVSLAVDTVARSNVTPRSPGRAWPGDSDI-RQRPIPRSDDIRLSPAAYT 945


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 297 PPTGPDCVLSESDTRRRRGGAGALCIPPPPTP 202
           PPT P  +  E++     G    + IP P  P
Sbjct: 25  PPTRPTRLRREAEPEAEPGNNRPVYIPQPRPP 56


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 249 RRGGAGALCIPPPPTPRTACVERRTPAGSWAA 154
           R      + I  PP   T   E+R  AG+ AA
Sbjct: 601 RSSSTKGITIQEPPQWHTRSTEKRVSAGTPAA 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,826
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)