Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0085
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-2|ABO16460.1|  272|Caenorhabditis elegans Hypothetical ...    30   2.4  
AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine r...    30   2.4  
M98552-9|AAA28210.3|  569|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    29   5.5  
Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AC084154-2|ABO16460.1|  272|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.5 protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 560 WKQLVRYKINEL*VRECSNNSKRHFNKQRINGVYIISQSTRG 435
           W++++R+ I+ + V    + + R  NKQ ING + IS    G
Sbjct: 152 WREVLRFIIDRMKVGYSESGAIRKSNKQAINGQHSISGDDSG 193


>AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine
           receptor, class z protein56 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
 Frame = -1

Query: 425 RSKHGYLMFIYSHYSYIALIIETFYTEIRIFK--YW----LGFSSMTMFSHPLILTTYMK 264
           +S H  + +IY ++  I L+++  +   R+FK  YW    L F S  M  + L++ + + 
Sbjct: 147 KSIHANIHYIYIYHLLIILMLKIGFRRGRMFKNAYWYNPELLFWSWHMLGYILLIISALL 206

Query: 263 VKPG*ITRE*SQHVSCSRRYRPTIYYF 183
             P  I+     H++ ++  +P  Y F
Sbjct: 207 YLPIMISVRKLSHLASAQENKPQKYIF 233


>M98552-9|AAA28210.3|  569|Caenorhabditis elegans Hypothetical
           protein ZK370.8 protein.
          Length = 569

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 327 LARFFFHDNVFTSINTNHLYESKTWINYKGII 232
           L + +   ++F  I  NH Y  K W  Y G +
Sbjct: 330 LFKLYSFASIFVVIRLNHFYSLKIWFQYNGCV 361


>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 407 LMFIYSHYSYIALIIETFYTEIRIFKYWLGFSS 309
           + FI   YS +   I +F+T + +F+YW+  SS
Sbjct: 91  ITFIVVSYSGLYATIVSFFTVMFLFRYWIMMSS 123


>Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical
           protein K05D4.8 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 115 HAFVI*SLKYYITTVL--WETQAFTK**IVGLYLLEHDTCCDYSLVIYPGFTFI*VVSIN 288
           H F++ S   YI  +L  W+T    K     L+ L++   C + L+I   F +I +   N
Sbjct: 190 HLFLLISALAYIPLILNIWKTSKHLK--SAQLHKLQNHIMCQFLLIIASKFIYIPIFLFN 247

Query: 289 G 291
           G
Sbjct: 248 G 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,327,824
Number of Sequences: 27780
Number of extensions: 404173
Number of successful extensions: 889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)