Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0085
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.7  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   4.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.2  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 388 ITAILHLLSKHFTQKSGFL 332
           ++  LHLL +HF+Q+   L
Sbjct: 143 VSGALHLLFRHFSQRQEVL 161


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 511 VPIILNGILISKGSMVSILLVRVLE 437
           +P+++ GI+   G +V++L+   LE
Sbjct: 56  IPVVMAGIIAIYGLVVAVLIAGGLE 80


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 388 ITAILHLLSKHFTQKSGFL 332
           ++  LHLL +HF+Q+   L
Sbjct: 111 VSGALHLLFRHFSQRQEVL 129


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 278 LVLMDVKTLSWKKNRASI*KSGFLC 352
           LV +D K  +W+     I  S FLC
Sbjct: 380 LVSLDKKQYTWRHTSVLIGWSAFLC 404


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 114 TCIRHLITEILHNDSSVGNASFHEIINCWSI 206
           TC    + + +H D  VG ++ H     W I
Sbjct: 322 TCFTMPLLDKMHIDDPVGASATHGASGIWGI 352


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 665 NLNLSLMT*PKKLLAINKCVL*MSPLF 745
           ++NL + T PK     N CVL  + +F
Sbjct: 467 DMNLEISTRPKSNTVENACVLKNTEIF 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,186
Number of Sequences: 438
Number of extensions: 5611
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)