Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0084
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 38 0.002
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 28 1.4
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 28 1.4
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 1.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 5.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.7
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 7.6
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 7.6
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 7.6
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 26 7.6
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 286 ISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTR 396
++ G G+G++ LWLDG L + R + N PL+ R
Sbjct: 134 LAFGGGNGRYSLWLDGSLEYAYSSRTPAFENNPLSYR 170
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 5 NVFGAMTSCALHPSEHFYGTGESFLYSF 88
+VFG L P+ H++G+ E+FL+ +
Sbjct: 81 DVFGVFIPDYLIPAPHYFGSEETFLWKY 108
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 348 PQVQVSVQPQTEFSIASADRYIVVAPTNEIHVSPVHPQYLNLVLTVCD 205
P V++ + P+T + S D + V + ++ H Y+N V TVCD
Sbjct: 1149 PHVEMRICPKTLTPVYSGDDFDVCSVCGAVY----HKGYVNEVCTVCD 1192
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 95 IEEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTV 217
+E+DT GA+ V +D+++ E S+N +K+ EQ + +
Sbjct: 56 LEQDTDFGANEVVGSDNSSPEKRSENSPSKRKDILEQRKNL 96
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 134 HADDANKETDSDNQSDAKKEDNEQSQTVK 220
+ADDANKE + + SD N Q +K
Sbjct: 78 NADDANKEPEKQSTSDYVSRKNRHMQLIK 106
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 525 CYENLTLLQICLYDVSMQLSQNFCSDYASLVKRTEP*PMFTCSSSI 662
C ENL LLQICL V+ + + L++ ++P TCS+ +
Sbjct: 104 CSENLALLQICLNHVN-EYPLVLLTLTIRLLRFSKPTSAITCSNDV 148
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 NNVFGAMTSCALHPSEHFYGTGESF-LYSFQRIEEDTSPGAHGPVHADDANKETDSDN 172
N+V G ++ ++ Y E +Y E+D S A V DDA+ SDN
Sbjct: 1839 NSVLGIFQGDIVNENDENYEDSEDDGVYEEMEFEDDQSGSADSVVSEDDADDVMYSDN 1896
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +2
Query: 38 HPSEHFYGTGESFLYSFQRIEEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQ 205
HP+ F SF + I E S VH + ++D++ +++ E+ E+
Sbjct: 69 HPNRPFRTNSSSFSPNDYSISESPSKSKKDGVHVSAVQLDNETDSEVESEVEELER 124
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 374 PYVLHRCVRPKYRSPSSHRPNFPSPAPIDILSLLPRMKYMCLPSIPS 234
P H C + P SH P +P P+ S P ++ +P +PS
Sbjct: 120 PTSYHACSNNQSPFPHSHHPPLHNPLPV---SCQPVLRPPPVPQVPS 163
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 413 FTMKSSRVVSGSLPYVLHRCVRPKYRSPSS 324
F + + SG L Y LHR PKY + S
Sbjct: 48 FVYAFASISSGFLHYQLHRAAAPKYDARGS 77
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 101 EDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYWGWT-GDTCISFVGA 277
+D G GP + +D ++ + D D + NE+ Q ++ K +G G I
Sbjct: 113 DDEFLGFSGPENLEDVDESSAEDVSGDEAEIMNEEGQQIEQKKDAFGLNDGFFDIDNFNK 172
Query: 278 TTIYRSALAMENSVCG 325
T+ A+E V G
Sbjct: 173 QTLALEEEAVEEGVLG 188
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 492 TRNKL*LSYELCYENLTLLQICLYDVSMQLSQNFCSDYASLV 617
TR++ L Y+ + + IC++ +S QL Q D SLV
Sbjct: 52 TRSESNLQSNYKYDQVPMYSICVFCLSGQLLQTLTWDKTSLV 93
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 666 ACPDTSAALRWRVNPSQLSLSKLE 737
A PDTS ALR+R SQLS S E
Sbjct: 94 ASPDTSVALRYR--SSQLSSSTFE 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,355
Number of Sequences: 5004
Number of extensions: 59897
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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