Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0084
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)                     47   2e-05
SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.023
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)                   32   0.66 
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)                     30   2.0  
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)                     30   2.7  
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)                     29   3.5  
SB_36234| Best HMM Match : E-MAP-115 (HMM E-Value=0.25)                29   4.6  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   4.6  
SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               29   6.1  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_48720| Best HMM Match : DAGAT (HMM E-Value=1.5e-09)                 29   6.1  
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              29   6.1  

>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
          Length = 870

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +1

Query: 247 GRHMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQR 360
           G + +F++GS D+++ G+G G FGLWLD D Y G + +
Sbjct: 730 GENNFFMKGSRDSVAFGSGRGHFGLWLDEDFYHGSSNK 767



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 8   VFGAMTSCALHPSEHFYGTGESFLYSF 88
           +FG ++S  L  S+ FYGTGESFL+ F
Sbjct: 691 IFGVLSSLPLRISDGFYGTGESFLFKF 717


>SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 280 DNISIGAGDGKFGLWLDGDLYLG--RTQRCKTYGNEPLTTREDFIVKIMECW 429
           + + +G     FGLWL      G  R   C TYGN  L+ +E F + ++E W
Sbjct: 685 NGLGMGGQYEYFGLWLQDSFGPGHCRGDPCTTYGNPQLSGKEKFKMDVLEVW 736


>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
          Length = 491

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 350 RPKYRSPSSHRPNFPSPAPID-ILSLLPRMKYMCLP 246
           RPK+  P SHRPNF  P P+D + S  P  +YM  P
Sbjct: 81  RPKH-GPKSHRPNFLMP-PLDKLFSGKPENRYMGAP 114


>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
          Length = 878

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 98  EEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYWGWTGDTCISFVGA 277
           E D   G   P    + NKE    +++DA+KE+ + +++ K   +  G+ G   +++V  
Sbjct: 3   EFDDEFGPTDPPVEPEQNKEPVEVDEADAEKEE-KANESRKDLIEIGGFLGIALVTYVLY 61

Query: 278 TTIYRSA 298
           TTI  SA
Sbjct: 62  TTIITSA 68


>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
          Length = 1656

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 122  HGPVHADDANKETDSDNQSDAKKEDNEQSQT 214
            H PVH DD +   D + + D   +DN+   T
Sbjct: 1155 HRPVHHDDDDDSDDDEEKEDDDDDDNDDDDT 1185


>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 134 HADDANKETDSDNQSDAKKEDNEQS 208
           + DD NK+ DSDN  D   +DN+ +
Sbjct: 52  NGDDDNKDDDSDNNYDDNDDDNDDN 76


>SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)
          Length = 404

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 140 DDANKETDSDNQSDAKKEDNEQS 208
           DD +K  D D++ DA+KED ++S
Sbjct: 203 DDDDKTDDDDDKKDAEKEDKDES 225


>SB_36234| Best HMM Match : E-MAP-115 (HMM E-Value=0.25)
          Length = 257

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 131 VHADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYWG 241
           VH D + ++ D + +   K+E+  +      KFK WG
Sbjct: 98  VHRDKSGRKRDLEAEKRIKEEEEREKAKDDEKFKQWG 134


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 131  VHADDANKETDSDNQSDAKKEDNEQSQTVKT 223
            +  +D ++E++SD   +  K+D EQ QT  T
Sbjct: 1067 IKREDDDEESESDEYDEDNKQDGEQQQTKNT 1097


>SB_54442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 113 PGAHGPVHADDANKETDSDNQSDAKKE-DNEQSQTV 217
           PG HG   +DDAN   D DN  D   + D ++  TV
Sbjct: 99  PGCHGQRESDDAN--DDDDNNDDCNDDYDYDELMTV 132


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 407 MKSSRVVSGSLPYVLHRCVRPKYRSPSS----HRPNFPSPAPIDILSLLPRMKYMCLPSI 240
           +K  R V+ S P  L +   P+ + PS+    H P  P   P+D+  + P        S 
Sbjct: 407 VKWGRSVNWSAPVDLQQVTGPQIKLPSASGSRHHPTTPQSLPVDMQQVTPPQVNPITIST 466

Query: 239 PST 231
           PS+
Sbjct: 467 PSS 469


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 98   EEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTVKTKF 229
            +ED S G     ++D  +++  SD +S+    DNE S  +   F
Sbjct: 1528 KEDCSDGESKDHYSDGESEQDSSDGESEEVSSDNESSSDLLMSF 1571


>SB_48720| Best HMM Match : DAGAT (HMM E-Value=1.5e-09)
          Length = 244

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 140 DDANKETDSDNQSDAKKEDNEQSQTVKTKFKYW---GWTGDTCISFVGATT 283
           DD N + D D+  D   + N+    +     +W   GW GD    ++G +T
Sbjct: 173 DDDNDDDDDDDDDDIDDDTNDYDY-IDVGSPWWRFNGWMGDVSKKYLGFST 222


>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 406

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 350 RPKYRSPSSHRPNFPS-PAPIDILSLLPRMKYMCLPSIPST 231
           RP Y+ PS      PS P+     SLLP ++   LP IP+T
Sbjct: 201 RPTYKHPSYPSYKHPSYPSSHIQASLLPHIQASLLPLIPNT 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,981,897
Number of Sequences: 59808
Number of extensions: 475564
Number of successful extensions: 2226
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2202
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)