Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0083
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...   129   5e-31
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...   101   1e-22
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    30   0.40 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   0.70 
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    29   0.92 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   3.7  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    26   4.9  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   6.5  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   8.6  

>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  129 bits (311), Expect = 5e-31
 Identities = 53/85 (62%), Positives = 66/85 (77%)
 Frame = +2

Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
           +T +G+ +ML+K++  DFG+CPRV C  QPMLP+GLSD+     VKLYCPRC DVYTPKS
Sbjct: 93  LTAQGLYKMLEKYKKCDFGHCPRVLCNGQPMLPVGLSDIAHTKSVKLYCPRCEDVYTPKS 152

Query: 434 SRHHHTDGAYFGTGFPHMVFMVHPD 508
            RH   DGAYFGT FPHM+F V+P+
Sbjct: 153 QRHASIDGAYFGTSFPHMLFQVYPE 177



 Score =  112 bits (270), Expect = 4e-26
 Identities = 51/83 (61%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
 Frame = +3

Query: 12  SSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILD-LEPDNP 188
           S +   W+ WF  L+GNEFFCEVDED+I D+FNLTGL+ +VPHY ++LD+ILD L+PD P
Sbjct: 10  SDDSQYWVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLP 69

Query: 189 NE-SDLVEQASEILYGLIHARYI 254
            E  D VE ++  LYGLIHARYI
Sbjct: 70  EEVQDEVEASARHLYGLIHARYI 92



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/17 (52%), Positives = 14/17 (82%), Gaps = 2/17 (11%)
 Frame = +1

Query: 523 PASQ--FVPRLYGFKIH 567
           P SQ  ++PR++GFK+H
Sbjct: 181 PKSQERYIPRIFGFKVH 197


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score =  101 bits (241), Expect = 1e-22
 Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 3/82 (3%)
 Frame = +3

Query: 18  EEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILD-LEPDNPN- 191
           E VSWI+WFC+  G E+F EV ED+I D FNLTGLN  VP Y EALD+ILD   PD    
Sbjct: 37  ENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTAPDTLEN 96

Query: 192 -ESDLVEQASEILYGLIHARYI 254
            + D++E +++ILYGLIH RYI
Sbjct: 97  FDMDVIETSAQILYGLIHQRYI 118



 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
 Frame = +2

Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
           +T  G+ QM +K+  G FG CPRV C    +LP GLSD+  +  V L+CP C+D+Y P S
Sbjct: 119 ITRTGLHQMAEKYSMGIFGCCPRVNCCYTHVLPAGLSDIVGKMPVMLFCPNCLDLYAPSS 178

Query: 434 SRHHHTDGAYFGTGFPHMVFMVHPD-NDQNDLP 529
           SR+ + DG++FG  FPH+ F  +P+ N +  +P
Sbjct: 179 SRYKNIDGSFFGATFPHLFFESYPELNPKRSIP 211


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 102 KFNLTGLNEQVPHYREALDMILDLEPDNPNES 197
           K +L GLNE V +Y E LDM+L L  +N  E+
Sbjct: 877 KISLKGLNEGV-NYEEFLDMLLSLPAENNVET 907


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 51  LRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDL-EPDNPN-ESDLVEQASEI 224
           ++ N +F  +D+D I+DK +L   N+ + H  E  +   D  E  +P  + D+  + S I
Sbjct: 165 IQENPYFNNIDQDSISDK-SLPSTNQSLHHSEEDTESDNDFSESIHPEFDIDVFYKVSNI 223

Query: 225 LY 230
           LY
Sbjct: 224 LY 225


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -1

Query: 222 SPMLVPPDQIHLDCLAPDPESC-----PAPLYNVELAHLSRLD*IYHLCSLRQPH 73
           SP  V   +  L  +AP+PES      P P    +  H+  L  + HLC LR+ +
Sbjct: 3   SPCTVKEKRSTLRSVAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDY 57


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 580  QIQQAAANSKPPQRSLSYNNGKR*ASAAPTQHTSRN 687
            ++++    ++PP+R+L  N+GK    AA  + T+RN
Sbjct: 1269 EVEEEPRQAEPPKRALRSNSGK----AASNKRTTRN 1300


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 373 GDVRQTNWQHRLAFTVYTW 317
           GDV ++ WQ+  +FT+  W
Sbjct: 76  GDVDESGWQYGFSFTMNNW 94


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 315 AHVYTVNANLCCQLVCRTSPPKRW*SCT 398
           A+V+    N   +    TSPP+RW +CT
Sbjct: 8   ANVHFEGQNQSSEGQLSTSPPRRWRNCT 35


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 42  FCTLRGNEFFCEVDEDYINDKFN-LTGLNEQVPHYREALDMILDLEPDNPNESDL 203
           +C +  NE    V+ D   D+ + LTG+++      E L  + + E   PNES+L
Sbjct: 261 YCPVDHNEVSDGVETDIDVDQVDSLTGIHDHHIINNEQLIDLTEQEKKQPNESNL 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,377
Number of Sequences: 5004
Number of extensions: 70527
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)