Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0083
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0955 + 21789616-21789778,21791622-21791688,21792285-217923... 120 9e-28
07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677... 118 5e-27
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 31 0.97
04_04_1660 - 35140641-35141894 31 1.3
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 30 2.2
01_06_0347 + 28592552-28593502 30 2.2
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 26 2.6
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 29 2.9
08_01_0625 + 5444547-5444912 28 6.8
03_05_1020 + 29748135-29748281,29748411-29748794,29749127-29749627 28 6.8
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 28 6.8
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751... 28 9.0
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 28 9.0
>10_08_0955 +
21789616-21789778,21791622-21791688,21792285-21792346,
21792508-21792729,21792993-21793102,21793195-21793236,
21793271-21793303
Length = 232
Score = 120 bits (290), Expect = 9e-28
Identities = 52/87 (59%), Positives = 68/87 (78%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDN- 185
S E+ SWI+WFC+LRGNEFFCE+D+DYI D FNL GL+ QVP+Y ALD+ILD+E N
Sbjct: 113 SEGEDTSWISWFCSLRGNEFFCEIDDDYIQDDFNLCGLSNQVPYYDYALDLILDIESSNG 172
Query: 186 ----PNESDLVEQASEILYGLIHARYI 254
+++L+E ++E+LYGLIHARYI
Sbjct: 173 DVFTEEQNELIESSAEMLYGLIHARYI 199
Score = 34.7 bits (76), Expect = 0.078
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPR 322
+T++G++ ML+KF++ DFG CPR
Sbjct: 200 LTSKGLAAMLEKFKNYDFGRCPR 222
>07_03_0465 +
18465966-18466206,18467424-18467443,18467444-18467729,
18468557-18468666,18468744-18468909,18469303-18469433
Length = 317
Score = 118 bits (284), Expect = 5e-27
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMILDLEPDN- 185
S E+ SWI+W+C+LRGNEFFCEVD+DYI D FNL GL+ QVP+Y ALD+ILD+E +
Sbjct: 124 SDGEDHSWISWYCSLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDIESSHG 183
Query: 186 ----PNESDLVEQASEILYGLIHARYI 254
+++LVE A+E+LYGLIHARYI
Sbjct: 184 DMFTEEQNELVESAAEMLYGLIHARYI 210
Score = 107 bits (258), Expect = 7e-24
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = +2
Query: 254 MTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDVYTPKS 433
+T++G++ ML+K+++ DFG CPRVYC QP LP+G SD+ + VK+YCP+C D+Y P+S
Sbjct: 211 LTSKGLAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIHRSSTVKIYCPKCEDIYYPRS 270
Query: 434 SRHHHTDGAYFGTGFPHMVFMVH 502
+ DGAYFGT FPH+ M +
Sbjct: 271 KYQGNIDGAYFGTTFPHLFLMTY 293
Score = 32.7 bits (71), Expect = 0.32
Identities = 9/19 (47%), Positives = 18/19 (94%)
Frame = +1
Query: 511 RPKRPASQFVPRLYGFKIH 567
+P++P+ ++VPR++GFK+H
Sbjct: 297 KPQKPSQRYVPRVFGFKLH 315
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 658 LRPNVYRCCTTGCAAAAWSSQPPAGFGR-RAGES*TRIVLVRIERQV 521
L P + C +GC AAA PAGF + E+ T R++ ++
Sbjct: 175 LLPGIPFCLDSGCGAAACDDDKPAGFAHLGSAEADTSAAAARVDSEI 221
>04_04_1660 - 35140641-35141894
Length = 417
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 670 ESARLRPNVYRCCTTGCAAAAWSSQPP 590
E+ R+ PN+YRC T C AAA + P
Sbjct: 319 EAGRMPPNMYRCFTGLCEAAAQGNAMP 345
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = -3
Query: 637 CCTTGCAAAAWSSQPPAGFGRRA---GES*TRIVLVRIERQ 524
CC+T CA A W G + GE +VL R+E +
Sbjct: 25 CCSTPCAVATWRRSVKRKLGEKGDGEGEGEGAVVLARVEAE 65
>01_06_0347 + 28592552-28593502
Length = 316
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +3
Query: 9 SSSEEVSWIAWF-------CTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMIL 167
+ E++W+ F CTL G +FFC+ N K + TG +V +Y ++M
Sbjct: 254 NEKREINWLFLFLGQMLGCCTLEGLKFFCK------NTKNHCTGAKTRVLYY-AYIEMCR 306
Query: 168 DLEPDNP 188
L+P P
Sbjct: 307 QLDPQGP 313
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 26.2 bits (55), Expect(2) = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 363 RTSPPKRW*SCTARAA 410
R SPP RW CT AA
Sbjct: 502 RMSPPSRWSMCTVHAA 517
Score = 21.8 bits (44), Expect(2) = 2.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 492 SWCTPITTKTTCLSIRTKTIRVQDSPARLPNPAGG 596
S CT ++ C S T+ R SP LP +GG
Sbjct: 510 SMCTVHAARSWCRSAATRGARRGTSP--LPPASGG 542
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 694 PKCSAMCVESARLRPNVYRCCTTGCAAAAWSSQPPAGF 581
P+C++ RLRP++ C +G AA A + P F
Sbjct: 15 PRCASPLSYDLRLRPDLAACAFSGSAAVAVAVSAPTRF 52
>08_01_0625 + 5444547-5444912
Length = 121
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = -1
Query: 702 DRIQNVPRCVLSRRG*GLTFTVVVRQAALRRLGVRSRLLDLVGERVNLEPV*SWYELRGR 523
D+ + PR V S R G T V V+ +AL R RSR+L L R V + Y G
Sbjct: 27 DKKTSSPREVGSARERGGTPPVPVKASALNRSARRSRVLLLPPRRCFSSTVAAGYRRGGG 86
Query: 522 SFWSL 508
W +
Sbjct: 87 EDWGM 91
>03_05_1020 + 29748135-29748281,29748411-29748794,29749127-29749627
Length = 343
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -1
Query: 630 RQAALRRLGVRSRLLD 583
R+ ALRRLGVR+R+LD
Sbjct: 260 RRGALRRLGVRARVLD 275
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 637 CCTTGCAAAAWSSQPPAGFGRRAGES*TRIVLVRIERQVVLVVI 506
CC G AA + AG GR+ G + T + LV + + V+
Sbjct: 5 CCGRGAGGAAEAGAAGAGGGRKRGCAGTALALVALAAAAAVAVL 48
>08_02_0775 +
21070898-21071290,21071406-21071504,21075103-21075126,
21076344-21076391,21076536-21076788,21076945-21077055,
21077544-21077680,21077778-21077891,21077982-21078181,
21078268-21078516,21078730-21078886
Length = 594
Score = 27.9 bits (59), Expect = 9.0
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = -3
Query: 679 MCVESARLRPNV-YRCCTTGCAAAAWSSQPPAGFGRRAGES*TRIVLVRI----ERQVVL 515
+ V + RLRP+ Y+ G AAAA SS+ G A + +VLV+I ER+V
Sbjct: 75 LAVRAFRLRPDRRYKWLPIGAAAAAASSEDDEESGLVAAAAAFPMVLVQIPMFNEREVYK 134
Query: 514 VVIG 503
+ IG
Sbjct: 135 LSIG 138
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = -3
Query: 718 RLQHLRSDPKCSAMCVESARLRPNVYRCCTTGCAAAAWSSQ 596
R HL S P C+ SAR P CC T AAAA SS+
Sbjct: 17 RSLHL-SKPSCATF---SARALPPAAHCCRTVVAAAAPSSR 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,876,605
Number of Sequences: 37544
Number of extensions: 539954
Number of successful extensions: 1395
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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